Literature DB >> 16582489

Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

Tomoya Tsukazaki1, Hiroyuki Mori, Shuya Fukai, Tomoyuki Numata, Anna Perederina, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Takatomo Sasaki, Dmitry G Vassylyev, Osamu Nureki, Koreaki Ito.   

Abstract

Thermus thermophilus has a multi-path membrane protein, TSecDF, as a single-chain homologue of Escherichia coli SecD and SecF, which form a translocon-associated complex required for efficient preprotein translocation and membrane-protein integration. Here, the cloning, expression in E. coli, purification and crystallization of TSecDF are reported. Overproduced TSecDF was solubilized with dodecylmaltoside, chromatographically purified and crystallized by vapour diffusion in the presence of polyethylene glycol. The crystals yielded a maximum resolution of 4.2 angstroms upon X-ray irradiation, revealing that they belonged to space group P4(3)2(1)2. Attempts were made to improve the diffraction quality of the crystals by combinations of micro-stirring, laser-light irradiation and dehydration, which led to the eventual collection of complete data sets at 3.74 angstroms resolution and preliminary success in the single-wavelength anomalous dispersion analysis. These results provide information that is essential for the determination of the three-dimensional structure of this important membrane component of the protein-translocation machinery.

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Year:  2006        PMID: 16582489      PMCID: PMC2222563          DOI: 10.1107/S1744309106007779

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

1.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

2.  SecDFyajC forms a heterotetrameric complex with YidC.

Authors:  Nico Nouwen; Arnold J M Driessen
Journal:  Mol Microbiol       Date:  2002-06       Impact factor: 3.501

3.  Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes.

Authors:  Hiroyuki Mori; Tomoya Tsukazaki; Ryoji Masui; Seiki Kuramitsu; Shigeyuki Yokoyama; Arthur E Johnson; Yoshiaki Kimura; Yoshinori Akiyama; Koreaki Ito
Journal:  J Biol Chem       Date:  2003-01-17       Impact factor: 5.157

4.  Genetic and molecular characterization of the Escherichia coli secD operon and its products.

Authors:  K J Pogliano; J Beckwith
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

5.  Structure of the E. coli protein-conducting channel bound to a translating ribosome.

Authors:  Kakoli Mitra; Christiane Schaffitzel; Tanvir Shaikh; Florence Tama; Simon Jenni; Charles L Brooks; Nenad Ban; Joachim Frank
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

6.  SecY protein, a membrane-embedded secretion factor of E. coli, is cleaved by the ompT protease in vitro.

Authors:  Y Akiyama; K Ito
Journal:  Biochem Biophys Res Commun       Date:  1990-03-16       Impact factor: 3.575

7.  Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.

Authors:  H Schägger; G von Jagow
Journal:  Anal Biochem       Date:  1987-11-01       Impact factor: 3.365

8.  The genome sequence of the extreme thermophile Thermus thermophilus.

Authors:  Anke Henne; Holger Brüggemann; Carsten Raasch; Arnim Wiezer; Thomas Hartsch; Heiko Liesegang; Andre Johann; Tanja Lienard; Olivia Gohl; Rosa Martinez-Arias; Carsten Jacobi; Vytaute Starkuviene; Silke Schlenczeck; Silke Dencker; Robert Huber; Hans-Peter Klenk; Wilfried Kramer; Rainer Merkl; Gerhard Gottschalk; Hans-Joachim Fritz
Journal:  Nat Biotechnol       Date:  2004-04-04       Impact factor: 54.908

9.  SecD is involved in the release of translocated secretory proteins from the cytoplasmic membrane of Escherichia coli.

Authors:  S Matsuyama; Y Fujita; S Mizushima
Journal:  EMBO J       Date:  1993-01       Impact factor: 11.598

10.  SecD and SecF facilitate protein export in Escherichia coli.

Authors:  J A Pogliano; J Beckwith
Journal:  EMBO J       Date:  1994-02-01       Impact factor: 11.598

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  8 in total

1.  Crystallization and preliminary X-ray diffraction of the first periplasmic domain of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

Authors:  Yuka Echizen; Tomoya Tsukazaki; Naoshi Dohmae; Ryuichiro Ishitani; Osamu Nureki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

2.  Conformational variation of the translocon enhancing chaperone SecDF.

Authors:  Kazuhiro Mio; Tomoya Tsukazaki; Hiroyuki Mori; Masaaki Kawata; Toshio Moriya; Yoshikazu Sasaki; Ryuichiro Ishitani; Koreaki Ito; Osamu Nureki; Chikara Sato
Journal:  J Struct Funct Genomics       Date:  2013-12-25

3.  Electric-Field-Induced Protein Translocation via a Conformational Transition in SecDF: An MD Study.

Authors:  Emel Ficici; Daun Jeong; Ioan Andricioaei
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

4.  Structure and function of a membrane component SecDF that enhances protein export.

Authors:  Tomoya Tsukazaki; Hiroyuki Mori; Yuka Echizen; Ryuichiro Ishitani; Shuya Fukai; Takeshi Tanaka; Anna Perederina; Dmitry G Vassylyev; Toshiyuki Kohno; Andrés D Maturana; Koreaki Ito; Osamu Nureki
Journal:  Nature       Date:  2011-05-11       Impact factor: 49.962

5.  Membrane chaperone SecDF plays a role in the secretion of Listeria monocytogenes major virulence factors.

Authors:  Tamar Burg-Golani; Yair Pozniak; Lev Rabinovich; Nadejda Sigal; Ran Nir Paz; Anat A Herskovits
Journal:  J Bacteriol       Date:  2013-09-20       Impact factor: 3.490

6.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

Review 7.  The mechanism of protein export enhancement by the SecDF membrane component.

Authors:  Tomoya Tsukazaki; Osamu Nureki
Journal:  Biophysics (Nagoya-shi)       Date:  2011-11-30

8.  Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.

Authors:  Yoshiki Tanaka; Kunihito Yoshikaie; Azusa Takeuchi; Muneyoshi Ichikawa; Tomoyuki Mori; Sayaka Uchino; Yasunori Sugano; Toshio Hakoshima; Hiroshi Takagi; Gen Nonaka; Tomoya Tsukazaki
Journal:  Sci Adv       Date:  2020-08-26       Impact factor: 14.136

  8 in total

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