Literature DB >> 22102233

Crystallization and preliminary X-ray diffraction of the first periplasmic domain of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

Yuka Echizen1, Tomoya Tsukazaki, Naoshi Dohmae, Ryuichiro Ishitani, Osamu Nureki.   

Abstract

A membrane-integrated Sec component, SecDF, associates with the SecYEG protein-conducting channel and facilitates protein secretion and membrane-protein integration. SecDF contains 12 transmembrane helices and two periplasmic domains. The first periplasmic domain (P1) plays an important role in protein translocation. Here, the overexpression, purification and crystallization of the P1 domain of Thermus thermophilus SecDF are reported. The crystals diffracted X-rays to 2.3 Å resolution and belonged to space group C2, with unit-cell parameters a = 161.1, b = 35.8, c = 181.6 Å, suggesting that they contain four molecules per asymmetric unit. The initial phases were determined by the multiple-wavelength anomalous dispersion method using selenomethionine-labelled crystals.
© 2011 International Union of Crystallography. All rights reserved.

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Year:  2011        PMID: 22102233      PMCID: PMC3212452          DOI: 10.1107/S1744309111031885

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  SecDFyajC forms a heterotetrameric complex with YidC.

Authors:  Nico Nouwen; Arnold J M Driessen
Journal:  Mol Microbiol       Date:  2002-06       Impact factor: 3.501

2.  Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes.

Authors:  Hiroyuki Mori; Tomoya Tsukazaki; Ryoji Masui; Seiki Kuramitsu; Shigeyuki Yokoyama; Arthur E Johnson; Yoshiaki Kimura; Yoshinori Akiyama; Koreaki Ito
Journal:  J Biol Chem       Date:  2003-01-17       Impact factor: 5.157

Review 3.  The Sec translocase.

Authors:  David J F du Plessis; Nico Nouwen; Arnold J M Driessen
Journal:  Biochim Biophys Acta       Date:  2010-08-27

4.  Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer.

Authors:  Dmitry G Vassylyev; Hiroyuki Mori; Marina N Vassylyeva; Tomoya Tsukazaki; Yoshiaki Kimura; Tahir H Tahirov; Koreaki Ito
Journal:  J Mol Biol       Date:  2006-09-29       Impact factor: 5.469

Review 5.  Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.

Authors:  Tom A Rapoport
Journal:  Nature       Date:  2007-11-29       Impact factor: 49.962

6.  Involvement of SecDF and YidC in the membrane insertion of M13 procoat mutants.

Authors:  Minyong Chen; Kun Xie; Jijun Yuan; Liang Yi; Sandra J Facey; Nathalie Pradel; Long-Fei Wu; Andreas Kuhn; Ross E Dalbey
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

Authors:  Tomoya Tsukazaki; Hiroyuki Mori; Shuya Fukai; Tomoyuki Numata; Anna Perederina; Hiroaki Adachi; Hiroyoshi Matsumura; Kazufumi Takano; Satoshi Murakami; Tsuyoshi Inoue; Yusuke Mori; Takatomo Sasaki; Dmitry G Vassylyev; Osamu Nureki; Koreaki Ito
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-03-25

9.  SecD is involved in the release of translocated secretory proteins from the cytoplasmic membrane of Escherichia coli.

Authors:  S Matsuyama; Y Fujita; S Mizushima
Journal:  EMBO J       Date:  1993-01       Impact factor: 11.598

10.  SecD and SecF facilitate protein export in Escherichia coli.

Authors:  J A Pogliano; J Beckwith
Journal:  EMBO J       Date:  1994-02-01       Impact factor: 11.598

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  4 in total

1.  Conformational variation of the translocon enhancing chaperone SecDF.

Authors:  Kazuhiro Mio; Tomoya Tsukazaki; Hiroyuki Mori; Masaaki Kawata; Toshio Moriya; Yoshikazu Sasaki; Ryuichiro Ishitani; Koreaki Ito; Osamu Nureki; Chikara Sato
Journal:  J Struct Funct Genomics       Date:  2013-12-25

2.  Electric-Field-Induced Protein Translocation via a Conformational Transition in SecDF: An MD Study.

Authors:  Emel Ficici; Daun Jeong; Ioan Andricioaei
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

3.  Dynamic interaction of the sec translocon with the chaperone PpiD.

Authors:  Ilie Sachelaru; Narcis-Adrian Petriman; Renuka Kudva; Hans-Georg Koch
Journal:  J Biol Chem       Date:  2014-06-20       Impact factor: 5.157

Review 4.  The mechanism of protein export enhancement by the SecDF membrane component.

Authors:  Tomoya Tsukazaki; Osamu Nureki
Journal:  Biophysics (Nagoya-shi)       Date:  2011-11-30
  4 in total

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