Literature DB >> 16581375

Resonance Character of Hydrogen-bonding Interactions in Water and Other H-bonded Species.

F Weinhold1.   

Abstract

Hydrogen bonding underlies the structure of water and all biochemical processes in aqueous medium. Analysis of modern ab initio wave functions in terms of natural bond orbitals (NBOs) strongly suggests the resonance-type "charge transfer" (CT) character of H-bonding, contrary to the widely held classical-electrostatic viewpoint that underlies current molecular dynamics (MD) modeling technology. Quantum cluster equilibrium (QCE) theory provides an alternative ab initio-based picture of liquid water that predicts proton-ordered two-coordinate H-bonding patterns, dramatically different from the ice-like picture of electrostatics-based MD simulations. Recent X-ray absorption and Raman scattering experiments of Nilsson and co-workers confirm the microstructural two-coordinate picture of liquid water. We show how such cooperative "unsaturated" ring/chain topologies arise naturally from the fundamental resonance-CT nature of B:cdots, three dots, centeredHA hydrogen bonding, which is expressed in NBO language as n(B)-->sigma(AH)(*) intermolecular delocalization from a filled lone pair n(B) of the Lewis base (B:) into the proximal antibond sigma(AH)(*) of the Lewis acid (HA). Stabilizing n(O)-->sigma(OH)(*) orbital delocalization, equivalent to partial mixing of resonance structures H(2)O:cdots, three dots, centeredHOH H(3)O(+) cdots, three dots, centered(-):OH, is thereby seen to be the electronic origin of general enthalpic and entropic propensities that favor relatively small cyclic clusters such as water pentamers W(5c) in the QCE liquid phase. We also discuss the thermodynamically competitive three-coordinate clusters (e.g., icosahedral water buckyballs, W(24)), which appear to play a role in hydrophobic solvation phenomena. We conclude with suggestions for incorporating resonance-CT aspects of H-bonding into empirical MD simulation potentials in a computationally tractable manner.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16581375     DOI: 10.1016/S0065-3233(05)72005-2

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN: 0065-3233


  13 in total

1.  Effects of Salts of the Hofmeister Series on the Hydrogen Bond Network of Water.

Authors:  Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Mol Liq       Date:  2008-10-20       Impact factor: 6.165

2.  Signature of n→π* interactions in α-helices.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Protein Sci       Date:  2011-04-26       Impact factor: 6.725

3.  Development of polarizable models for molecular mechanical calculations II: induced dipole models significantly improve accuracy of intermolecular interaction energies.

Authors:  Junmei Wang; Piotr Cieplak; Jie Li; Jun Wang; Qin Cai; MengJuei Hsieh; Hongxing Lei; Ray Luo; Yong Duan
Journal:  J Phys Chem B       Date:  2011-03-10       Impact factor: 2.991

4.  High-Density "Windowpane" Coordination Patterns of Water Clusters and Their NBO/NRT Characterization.

Authors:  Frank Weinhold
Journal:  Molecules       Date:  2022-06-30       Impact factor: 4.927

5.  n-->pi* interactions in proteins.

Authors:  Gail J Bartlett; Amit Choudhary; Ronald T Raines; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2010-07-11       Impact factor: 15.040

6.  Changes in water structure induced by the guanidinium cation and implications for protein denaturation.

Authors:  J Nathan Scott; Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Phys Chem A       Date:  2008-10-08       Impact factor: 2.781

7.  Experimental Atom-by-Atom Dissection of Amide-Amide and Amide-Hydrocarbon Interactions in H2O.

Authors:  Xian Cheng; Irina A Shkel; Kevin O'Connor; John Henrich; Cristen Molzahn; David Lambert; M Thomas Record
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

8.  Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.

Authors:  William M Westler; I-Jin Lin; András Perczel; Frank Weinhold; John L Markley
Journal:  J Am Chem Soc       Date:  2011-01-05       Impact factor: 15.419

9.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

10.  Predicting the Ionic Product of Water.

Authors:  Eva Perlt; Michael von Domaros; Barbara Kirchner; Ralf Ludwig; Frank Weinhold
Journal:  Sci Rep       Date:  2017-08-31       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.