Literature DB >> 16568959

Polar networks control oligomeric assembly in membranes.

Chad D Tatko1, Vikas Nanda, James D Lear, William F Degrado.   

Abstract

Polar interactions have a profound influence on membrane stability and structure. A membrane-solubilized GCN4 peptide, MS-1, is used to study the impact of polar networks. Amide functionalities from amino acid side chains have been shown to promote peptide oligomerization, but lacked specificity. Herein, the hydrogen bonding interactions of an Asn side chain are coupled with the hydroxyl of Ser or Thr to generate a polar network. Analytical ultracentrifugation and fluorescence resonance energy transfer studies indicate that a trimer assembly is established where each membrane-embedded hydrogen bond contributes 1 kcal mol-1.

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Year:  2006        PMID: 16568959     DOI: 10.1021/ja055561a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Method to measure strong protein-protein interactions in lipid bilayers using a steric trap.

Authors:  Heedeok Hong; Tracy M Blois; Zheng Cao; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 2.  Membrane protein folding: how important are hydrogen bonds?

Authors:  James U Bowie
Journal:  Curr Opin Struct Biol       Date:  2010-11-12       Impact factor: 6.809

3.  Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design.

Authors:  Jack B Maguire; Scott E Boyken; David Baker; Brian Kuhlman
Journal:  J Chem Theory Comput       Date:  2018-04-20       Impact factor: 6.006

4.  Programmable design of orthogonal protein heterodimers.

Authors:  Zibo Chen; Scott E Boyken; Mengxuan Jia; Florian Busch; David Flores-Solis; Matthew J Bick; Peilong Lu; Zachary L VanAernum; Aniruddha Sahasrabuddhe; Robert A Langan; Sherry Bermeo; T J Brunette; Vikram Khipple Mulligan; Lauren P Carter; Frank DiMaio; Nikolaos G Sgourakis; Vicki H Wysocki; David Baker
Journal:  Nature       Date:  2018-12-19       Impact factor: 49.962

5.  Packing of apolar side chains enables accurate design of highly stable membrane proteins.

Authors:  Marco Mravic; Jessica L Thomaston; Maxwell Tucker; Paige E Solomon; Lijun Liu; William F DeGrado
Journal:  Science       Date:  2019-03-29       Impact factor: 47.728

6.  In Vivo Analysis of Infectivity, Fusogenicity, and Incorporation of a Mutagenic Viral Glycoprotein Library Reveals Determinants for Virus Incorporation.

Authors:  Daniel J Salamango; Khalid K Alam; Donald H Burke; Marc C Johnson
Journal:  J Virol       Date:  2016-06-24       Impact factor: 5.103

7.  Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides.

Authors:  Douglas H Pike; Vikas Nanda
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

8.  Accurate computational design of multipass transmembrane proteins.

Authors:  Peilong Lu; Duyoung Min; Frank DiMaio; Kathy Y Wei; Michael D Vahey; Scott E Boyken; Zibo Chen; Jorge A Fallas; George Ueda; William Sheffler; Vikram Khipple Mulligan; Wenqing Xu; James U Bowie; David Baker
Journal:  Science       Date:  2018-03-02       Impact factor: 47.728

9.  The membrane- and soluble-protein helix-helix interactome: similar geometry via different interactions.

Authors:  Shao-Qing Zhang; Daniel W Kulp; Chaim A Schramm; Marco Mravic; Ilan Samish; William F DeGrado
Journal:  Structure       Date:  2015-02-19       Impact factor: 5.006

Review 10.  Protein-protein interactions in the membrane: sequence, structural, and biological motifs.

Authors:  David T Moore; Bryan W Berger; William F DeGrado
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

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