| Literature DB >> 16563174 |
Tomoko Sugiura1, Nobuaki Maeno, Yasushi Kawaguchi, Syuji Takei, Hiroyuki Imanaka, Yoshifumi Kawano, Hisae Terajima-Ichida, Masako Hara, Naoyuki Kamatani.
Abstract
Recently, we reported that genetic polymorphisms within the human IL18 gene were associated with disease susceptibility to adult-onset Still's disease (AOSD), which is characterized by extraordinarily high serum levels of IL-18. Because high serum IL-18 induction has also been observed in the systemic type of juvenile idiopathic arthritis (JIA), we investigated whether similar genetic skewing is present in this disease. Three haplotypes, S01, S02, and S03, composed of 13 genetic polymorphisms covering two distinct promoter regions, were determined for 33 JIA patients, including 17 with systemic JIA, 10 with polyarthritis, and 6 with oligoarthritis. Haplotypes were also analyzed for 28 AOSD patients, 164 rheumatoid arthritis (RA) patients, 102 patients with collagen diseases, and 173 healthy control subjects. The frequency of individuals carrying a diplotype configuration (a combination of two haplotypes) of S01/S01 was significantly higher in the JIA patients, including all subgroups, than in the healthy controls (P = 0.0045, Fischer exact probability test; odds ratio (OR) = 3.55, 95% confidence interval (CI) = 1.55-8.14). In patients with systemic JIA, its frequency did not differ statistically from that of normal controls. Nevertheless, it is possible that haplotype S01 is associated with the phenotype of high IL-18 production in systemic JIA because the patients carrying S01/S01 showed significantly higher serum IL-18 levels compared with patients with other diplotype configurations (P = 0.017, Mann-Whitney U test). We confirmed that the frequency of the diplotype configuration of S01/S01 was significantly higher in AOSD patients than in healthy control subjects (P = 0.011, OR = 3.45, 95% CI = 1.42-8.36). Furthermore, the RA patients were also more predisposed to have S01/S01 (P = 0.018, OR = 2.00, 95% CI = 1.14-3.50) than the healthy control subjects, whereas the patients with collagen diseases did not. In summary, the diplotype configuration of S01/S01 was associated with susceptibility to JIA as well as AOSD and RA, and linked to significantly higher IL-18 production in systemic JIA. Possession of the diplotype configuration of S01/S01 would be one of the genetic risk factors for susceptibility to arthritis in the Japanese population.Entities:
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Year: 2006 PMID: 16563174 PMCID: PMC1526617 DOI: 10.1186/ar1930
Source DB: PubMed Journal: Arthritis Res Ther ISSN: 1478-6354 Impact factor: 5.156
Primers and probes for used allelic discrimination chemistry
| Forward and reverse primers (5' to 3') | Fluorescent-labeled probes (5' to 3') |
| SNP1F GCCCAGCTAATTTTGTTTTGTTTTGTT | SNP1 allele1 VIC- TTGCAGCGTTGCCCA-MGB |
| SNP1R GGAGTATCGTTTGAGGCTAAGAGTT | SNP1 allele2 FAM- TATTGCAGTGTTGCCCA-MGB |
| SNP2F TCCTAGCTCTGGGCATACGAAT | SNP2 allele1 VIC-CCACTTATCTATAGAGCTT-MGB |
| SNP2R AGCTGTATGCCTATGGAGCCTTA | SNP2 allele2 FAM-CACTTATCTGTAGAGCTT-MGB |
| SNP4F CTGGCAATTCTGCCTTGTTTCAG | SNP4 allele1VIC- CCGAAGATAAAAGAATC-MGB |
| SNP4R GGATTACAGCCGTGAGCCA | SNP4 allele2 FAM- CGAAGATAGAAGAATC-MGB |
| SNP5F AAGCTGAGGCAGGAAGATCAC | SNP5 allele1 VIC- TCGGGAGTTCGAGACC-MGB |
| SNP5R ACACAGGGTTTCACCATGCT | SNP5 allele2 FAM- CGGGAGTTGGAGACC-MGB |
| SNP6F TCCCTACTGTTGTTTCCGCC | SNP6 allele1VIC-TGAAGACCCTGGGC-MGB |
| SNP6R CCCGAAGTCCGAGCACC | SNP6 allele2 FAM-TGAAGACCCCGGGC-MGB |
| SNP9F GAAAGTTTTAACACTGGAAACTGCAA | SNP9 allele1 VIC-TTTTGGTAGCCCTCTC-MGB |
| SNP9R TTACACTTTCTGCAACAGAAAGTAAGC | SNP9 allele2 FAM-TTTTGGTATCCCTCTCC-MGB |
| SNP11F ACAGGTTTTGGAAGGCACAGA | SNP11 VIC- ACGGAAGAAAAGATTT-MGB |
| SNP11R AATAAAGTGGCAGAGGATACGAGTACT | SNP11 FAM-ACGGAAGAAAACATTT-MGB |
| SNP12F AATTGTCTCCCAGTGCATTTTGC | SNP12 allele1 VIC-CTGCCAACTCTGGCTG-MGB |
| SNP12R TCTTCCCGAAGCTGTGTAGACT | SNP12 allele2 FAM- CCAACGCTGGCTG-MGB |
| SNP13F AATTGTCTCCCAGTGCATTTTGC | SNP13 allele1 VIC-CAGCCGCTTTAGC-MGB |
| SNP13R TCTTCCCGAAGCTGTGTAGACT | SNP13 allele1 FAM- CAGCCACTTTAGC-MGB |
| SNP14F AGTTTAAACCATGTCTCAAGATCTCTGC | SNP14 allele1 VIC-TTGTGCTACAATTATT-MGB |
| SNP14R AGTACTTGTGACTCTGTCATTAATAGAAATACCT | SNP14 allele2 VIC-TTGTGCTACAGTTATT-MGB |
Figure 1A unique combination of 13 polymorphisms comprising three different haplotypes: S01, S02 and S03. The 9 bp insertion, single nucleotide polymorphisms (SNPs) 1, 6, 9, and 10 (open box); SNP2, 4, 5, and 14 (dark gray box), and SNP11, 12, 13, and 15 (gray box) are in linkage disequilibrium. An underline indicates a minor allele in the normal Japanese population. +, 9 bp (AACAGGACA) is inserted; -, 9 bp is not inserted.
Summary of polymorphisms comprising the three haplotypes
| Call of SNP | Genotype allele 1/2 (frequency of allele2a) | JSNP-ID | Location | Function | Previously reported call (reference no.) |
| 9 bp | -/+ (0.52) | ssj 0008978 | 5' flanking | Unknown | |
| SNP1 | C/T(0.52) | ssj 0008979 | 5' flanking | Unknown | |
| SNP2 | A/G(0.38) | ssj 0008980 | 5' flanking | Unknown | |
| SNP4 | T/C(0.38) | ssj 0008982 | 5' flanking | Unknown | |
| SNP5 | C/G(0.38) | ssj 0008983 | 5' flanking | Unknown | |
| SNP6 | T/C(0.52) | ssj 0008984 | 5' flanking | Unknown | |
| SNP9 | G/T(0.52) | ssj 0008987 | 5' flanking | Unknown | -656G/T (22) |
| SNP10 | C/A(0.52) | ssj 0008988 | 5' flanking | CRE | -607C/A (22) |
| SNP11 | G/C(0.14) | ssj 0008989 | 5' flanking | GATA-3 | -137G/C (22) |
| SNP12 | T/G(0.14) | ssj 0008990 | Exon 1 | Untranslated | +113T/G (22) |
| SNP13 | C/T(0.14) | ssj 0008991 | Exon 1 | Untranslated | +127C/T (22) |
| SNP14 | T/C(0.62) | ssj 0008992 | Intron 1 | Unknown | -920T/C (32) |
| SNP15 | C/G(0.14) | ssj 0008993 | Intron1 | NF-1 | -133C/G (32) |
aThe frequency of allele 2 in a normal Japanese population (n = 173). 9 bp, 9 base-pair insertion; CRE, cyclic AMP-responsive element-binding protein; GATA-3, GATA-binding protein 3; NF-1, nuclear factor-1. JSNP, a database of Japanese Single Nucleotide polymorphisms [48].
Numbers and frequencies of haplotype S01, S02 and S03
| S01 (%) | S02 (%) | S03 (%) | ||
| Normal | 131 (37.9) | - | 165 (47.6) | 50 (14.4) |
| JIA | ||||
| All | 36 (54.5) | 0.011 | 25 (37.9) | 5 (7.6) |
| Oligoarthritis | 10 (83.3) | 0.0021 | 2 (16.7) | 0 |
| Polyarthritis | 10 (50.0) | NS | 7 (35.0) | 3 (25.0) |
| Systemic | 16 (47.1) | NS | 16 (47.1) | 2 (5.9) |
| AOSD | 30 (53.6) | 0.028 | 20 (35.7) | 6 (10.7) |
| RA | 156 (47.6) | 0.013 | 119 (36.3) | 53 (16.2) |
| Collagen diseases | 87 (42.6) | NS | 89 (43.6) | 28 (13.7) |
aThe frequency of S01 was compared with that of normal subjects and analyzed by Fisher exact probability test. AOSD, adult-onset Still's disease; JIA, juvenile idiopathic arthritis; NS, not significant; RA, rheumatoid arthritis.
Numbers and frequencies of diplotype configurations
| S01/S01 (%) | Other typesb (%) | ||
| Normal | 24 (13.9) | - | 149 (86.1) |
| JIA | 12 (36.4) | 0.0045 | 21 (63.6) |
| All | |||
| Oligoarthritis | 4 (66.7) | 0.0059 | 2 (33.3) |
| Polyarthritis | 4 (40.0) | 0.048 | 6 (60.0) |
| Systemic | 4 (23.5) | NS | 13 (76.5) |
| AOSD | 10 (35.7) | 0.011 | 18 (64.3) |
| RA | 40 (24.4) | 0.018 | 124 (75.6) |
| Collagen diseases | 14 (13.7) | NS | 88 (86.3) |
aThe frequency of the S01/S01 diplotype configuration was compared with that of normal subjects and analyzed by Fisher exact probability test. bOther types include the diplotype configurations S01/S02, S01/S03, S02/S02, S02/S03 and S03/S03. AOSD, adult-onset Still's disease; JIA, juvenile idiopathic arthritis; NS, not significant; RA, rheumatoid arthritis.
Figure 2Serum levels of IL-18 in systemic juvenile idiopathic arthritis (JIA) patients with the S01/S01 diplotype configuration (n = 4) and other diplotype configurations (n = 13).