Literature DB >> 16551072

Flexibility and lengths of bis-peptide nanostructures by electron spin resonance.

Soraya Pornsuwan1, Gregory Bird, Christian E Schafmeister, Sunil Saxena.   

Abstract

We demonstrate the use of electron spin resonance (ESR) to determine long-range distances and flexibility in water-soluble bis-peptide molecular rods. Bis-peptide oligomers with 4-8 monomer units were synthesized. ESR determined that the end-to-end length of the peptides is linearly proportional to the number of monomers. The linear shape is, therefore, easily interpreted from the data. In addition, the flexibility of the rods was quantified directly from the ESR-determined distance distribution functions. Quantitative information on chain length and flexibility is important to develop the use of these oligomers as rodlike structural elements for applications such as bivalent display of ligands and as elements of future nanoscale devices.

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Year:  2006        PMID: 16551072     DOI: 10.1021/ja058143e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Simulating the dynamics and orientations of spin-labeled side chains in a protein-DNA complex.

Authors:  Jessica L Sarver; Jacqueline E Townsend; Gayathri Rajapakse; Linda Jen-Jacobson; Sunil Saxena
Journal:  J Phys Chem B       Date:  2012-03-20       Impact factor: 2.991

2.  Electron spin resonance shows common structural features for different classes of EcoRI-DNA complexes.

Authors:  Katherine M Stone; Jacqueline E Townsend; Jessica Sarver; Paul J Sapienza; Sunil Saxena; Linda Jen-Jacobson
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  Molecular-scale force measurement in a coiled-coil peptide dimer by electron spin resonance.

Authors:  Stefano V Gullà; Gaurav Sharma; Peter Borbat; Jack H Freed; Harishchandra Ghimire; Monica R Benedikt; Natasha L Holt; Gary A Lorigan; Kaushal Rege; Constantinos Mavroidis; David E Budil
Journal:  J Am Chem Soc       Date:  2009-04-22       Impact factor: 15.419

4.  Tuning conformation and properties of peptidomimetic backbones through dual N/Cα-substitution.

Authors:  R Kaminker; I Kaminker; W R Gutekunst; Y Luo; S Lee; J Niu; S Han; C J Hawker
Journal:  Chem Commun (Camb)       Date:  2018-05-17       Impact factor: 6.222

5.  Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe.

Authors:  Peter Z Qin; Ian S Haworth; Qi Cai; Ana K Kusnetzow; Gian Paola G Grant; Eric A Price; Glenna Z Sowa; Anna Popova; Bruno Herreros; Honghang He
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

6.  Significantly improved sensitivity of Q-band PELDOR/DEER experiments relative to X-band is observed in measuring the intercoil distance of a leucine zipper motif peptide (GCN4-LZ).

Authors:  Harishchandra Ghimire; Robert M McCarrick; David E Budil; Gary A Lorigan
Journal:  Biochemistry       Date:  2009-06-30       Impact factor: 3.162

7.  Site-directed spin labeling measurements of nanometer distances in nucleic acids using a sequence-independent nitroxide probe.

Authors:  Qi Cai; Ana Karin Kusnetzow; Wayne L Hubbell; Ian S Haworth; Gian Paola C Gacho; Ned Van Eps; Kálmán Hideg; Eric J Chambers; Peter Z Qin
Journal:  Nucleic Acids Res       Date:  2006-09-10       Impact factor: 16.971

  7 in total

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