Literature DB >> 16546147

Molecular dynamics simulations of trehalose as a 'dynamic reducer' for solvent water molecules in the hydration shell.

Youngjin Choi1, Kum Won Cho, Karpjoo Jeong, Seunho Jung.   

Abstract

Systematic computational work for a series of 13 disaccharides was performed to provide an atomic-level insight of unique biochemical role of the alpha,alpha-(1-->1)-linked glucopyranoside dimer over the other glycosidically linked sugars. Superior osmotic and cryoprotective abilities of trehalose were explained on the basis of conformational and hydration characteristics of the trehalose molecule. Analyses of the hydration number and radial distribution function of solvent water molecules showed that there was very little hydration adjacent to the glycosidic oxygen of trehalose and that the dynamic conformation of trehalose was less flexible than any of the other sugars due to this anisotropic hydration. The remarkable conformational rigidity that allowed trehalose to act as a sugar template was required for stable interactions with hydrogen-bonded water molecules. Trehalose made an average of 2.8 long-lived hydrogen bonds per each MD step, which was much larger than the average of 2.1 for the other sugars. The stable hydrogen-bond network is derived from the formation of long-lived water bridges at the expense of decreasing the dynamics of the water molecules. Evidence for this dynamic reduction of water by trehalose was also established based on each of the lowest translational diffusion coefficients and the lowest intermolecular coulombic energy of the water molecules around trehalose. Overall results indicate that trehalose functions as a 'dynamic reducer' for solvent water molecules based on its anisotropic hydration and conformational rigidity, suggesting that macroscopic solvent properties could be modulated by changes in the type of glycosidic linkages in sugar molecules.

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Year:  2006        PMID: 16546147     DOI: 10.1016/j.carres.2006.02.032

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  14 in total

1.  Solvation of Glucose, Trehalose, and Sucrose by the Soft Sticky Dipole-Quadrupole-Octupole Water Model.

Authors:  Jerez A Te; Ming-Liang Tan; Toshiko Ichiye
Journal:  Chem Phys Lett       Date:  2010-05-17       Impact factor: 2.328

2.  Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose stereoisomers.

Authors:  Dongqi Wang; Maria Lovísa Ámundadóttir; Wilfred F van Gunsteren; Philippe H Hünenberger
Journal:  Eur Biophys J       Date:  2013-05-10       Impact factor: 1.733

3.  Cryoprotection with L- and meso-trehalose: stereochemical implications.

Authors:  Seung-Kee Seo; Michael L McClintock; Alexander Wei
Journal:  Chembiochem       Date:  2006-12       Impact factor: 3.164

4.  Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters.

Authors:  Stéphane Abel; François-Yves Dupradeau; E Prabhu Raman; Alexander D MacKerell; Massimo Marchi
Journal:  J Phys Chem B       Date:  2010-12-30       Impact factor: 2.991

Review 5.  Effect of trehalose on protein structure.

Authors:  Nishant Kumar Jain; Ipsita Roy
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

6.  Thermal stability of alpha-amylase in aqueous cosolvent systems.

Authors:  Jay Kant Yadav; V Prakash
Journal:  J Biosci       Date:  2009-09       Impact factor: 1.826

Review 7.  Bacterial α-diglucoside metabolism: perspectives and potential for biotechnology and biomedicine.

Authors:  Cecelia A Garcia; Jeffrey G Gardner
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-07       Impact factor: 4.813

8.  Study of the dynamical properties of water in disaccharide solutions.

Authors:  S Magazù; F Migliardo; M T F Telling
Journal:  Eur Biophys J       Date:  2006-11-16       Impact factor: 2.095

9.  Functionality and prevalence of trehalose-based oligosaccharides as novel compatible solutes in ascospores of Neosartorya fischeri (Aspergillus fischeri) and other fungi.

Authors:  Timon T Wyatt; M Richard van Leeuwen; Elena A Golovina; Folkert A Hoekstra; Eric J Kuenstner; Edward A Palumbo; Nicole L Snyder; Cobus Visagie; Alex Verkennis; John E Hallsworth; Han A B Wösten; Jan Dijksterhuis
Journal:  Environ Microbiol       Date:  2014-10-22       Impact factor: 5.491

10.  Structural Comparison between Sucrose and Trehalose in Aqueous Solution.

Authors:  Christoffer Olsson; Jan Swenson
Journal:  J Phys Chem B       Date:  2020-04-03       Impact factor: 2.991

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