Literature DB >> 16544638

Fast, flexible algorithm for calculating photon correlations.

Ted A Laurence1, Samantha Fore, Thomas Huser.   

Abstract

We introduce a new algorithm for computing correlations of photon arrival time data acquired in single-molecule fluorescence spectroscopy and fluorescence correlation spectroscopy (FCS). The algorithm is based on rewriting the correlation as a counting operation on photon pairs and can be used with arbitrary bin widths and spacing. The flexibility of the algorithm is demonstrated by use of FCS simulations and single-molecule photon antibunching experiments. Execution speed is comparable to the commonly used multiple-tau correlation technique. Wide bin spacings are possible that allow for real-time software calculation of correlations, even for high count rates.

Mesh:

Year:  2006        PMID: 16544638     DOI: 10.1364/ol.31.000829

Source DB:  PubMed          Journal:  Opt Lett        ISSN: 0146-9592            Impact factor:   3.776


  17 in total

1.  Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy.

Authors:  Abigail E Miller; Amanda J Fischer; Ted Laurence; Christopher W Hollars; Richard J Saykally; J Clark Lagarias; Thomas Huser
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-14       Impact factor: 11.205

2.  Modulated fluorescence correlation spectroscopy with complete time range information.

Authors:  Gustav Persson; Per Thyberg; Jerker Widengren
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

3.  The enzyme mechanism of nitrite reductase studied at single-molecule level.

Authors:  Sofya Kuznetsova; Gerhild Zauner; Thijs J Aartsma; Hans Engelkamp; Nikos Hatzakis; Alan E Rowan; Roeland J M Nolte; Peter C M Christianen; Gerard W Canters
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-26       Impact factor: 11.205

4.  Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices.

Authors:  Nicholas F Dupuis; Erik D Holmstrom; David J Nesbitt
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

5.  High-throughput single-molecule fluorescence spectroscopy using parallel detection.

Authors:  X Michalet; R A Colyer; G Scalia; T Kim; Moran Levi; Daniel Aharoni; Adrian Cheng; F Guerrieri; Katsushi Arisaka; Jacques Millaud; I Rech; D Resnati; S Marangoni; A Gulinatti; M Ghioni; S Tisa; F Zappa; S Cova; S Weiss
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-01-24

6.  Stoichiometry of reconstituted high-density lipoproteins in the hydrated state determined by photon antibunching.

Authors:  Sonny Ly; Jitka Petrlova; Thomas Huser; Samantha Fore; Tingjuan Gao; John Voss; Ted A Laurence
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

7.  Inexpensive electronics and software for photon statistics and correlation spectroscopy.

Authors:  Benjamin D Gamari; Dianwen Zhang; Richard E Buckman; Peker Milas; John S Denker; Hui Chen; Hongmin Li; Lori S Goldner
Journal:  Am J Phys       Date:  2014-07       Impact factor: 1.022

8.  ABEL-FRET: tether-free single-molecule FRET with hydrodynamic profiling.

Authors:  Hugh Wilson; Quan Wang
Journal:  Nat Methods       Date:  2021-06-14       Impact factor: 28.547

9.  Fourier domain diffuse correlation spectroscopy with heterodyne holographic detection.

Authors:  Edward James; Samuel Powell
Journal:  Biomed Opt Express       Date:  2020-10-28       Impact factor: 3.732

10.  Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy.

Authors:  William K Ridgeway; David P Millar; James R Williamson
Journal:  Comput Phys Commun       Date:  2012-12-31       Impact factor: 4.390

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