Literature DB >> 16540311

Chromatin architecture.

Christopher L Woodcock1.   

Abstract

A complete understanding of the structure-function relationships of chromatin requires extending primarily one dimensional information, obtained from molecular genetic techniques and based on the underlying linear DNA sequence, to the three dimensional conformation. Recent progress in this endeavor has included the examination of fully defined nucleosomes and nucleosomal arrays assembled in vitro using X-ray diffraction, NMR spectroscopy, electron microscopy and atomic force microscopy. These studies have provided valuable insights into the structural roles of histone variants, the impact of histone mutations and the compaction of nucleosomal arrays. In addition, the diverse structural consequences of the binding of specific chromatin 'architectural' proteins are becoming apparent. These approaches provide an essential basis for understanding the conformation of the 'epigenome'.

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Year:  2006        PMID: 16540311     DOI: 10.1016/j.sbi.2006.02.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  50 in total

1.  N- and C-terminal domains determine differential nucleosomal binding geometry and affinity of linker histone isotypes H1(0) and H1c.

Authors:  Payal Vyas; David T Brown
Journal:  J Biol Chem       Date:  2012-02-10       Impact factor: 5.157

2.  The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.

Authors:  Rosana Collepardo-Guevara; Tamar Schlick
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

3.  Epigenetics in the human brain.

Authors:  Isaac Houston; Cyril J Peter; Amanda Mitchell; Juerg Straubhaar; Evgeny Rogaev; Schahram Akbarian
Journal:  Neuropsychopharmacology       Date:  2012-05-30       Impact factor: 7.853

Review 4.  Chromatin higher-order structure and dynamics.

Authors:  Christopher L Woodcock; Rajarshi P Ghosh
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-07       Impact factor: 10.005

5.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

Review 6.  Higher-order genome organization in human disease.

Authors:  Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-30       Impact factor: 10.005

7.  Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation.

Authors:  Nick Kepper; Dietrich Foethke; Rene Stehr; Gero Wedemann; Karsten Rippe
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

8.  The effect of internucleosomal interaction on folding of the chromatin fiber.

Authors:  René Stehr; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

9.  30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Authors:  Philip J J Robinson; Woojin An; Andrew Routh; Fabrizio Martino; Lynda Chapman; Robert G Roeder; Daniela Rhodes
Journal:  J Mol Biol       Date:  2008-04-29       Impact factor: 5.469

10.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

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