Literature DB >> 16539522

Conformational analysis of a cyclopropane analogue of phenylalanine with two geminal phenyl substituents.

Jordi Casanovas1, Ana I Jiménez, Carlos Cativiela, Juan J Pérez, Carlos Aleman.   

Abstract

Quantum mechanical methods have been used to investigate the intrinsic conformational preferences of 1-amino-2,2-diphenylcyclopropanecarboxylic acid (c(3)Dip), a cyclopropane analogue of phenylalanine bearing two phenyl substituents on the same beta-carbon. Geometries, energies, and frequencies were calculated on the N-acetyl-N'-methylamide derivative at the HF and B3LYP levels using the 6-31G(d), 6-311G(d), and 6-31+G(d,p) basis sets. Four minimum energy conformations were characterized: axial C(7), equatorial C(7), right-handed helix, and polyproline II. Analysis of the whole results, which are fully consistent with available experimental data, indicates that c(3)Dip tends to promote gamma-turn conformations.

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Year:  2006        PMID: 16539522     DOI: 10.1021/jp0542569

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

2.  Recent Progress on the Stereoselective Synthesis of Cyclic Quaternary alpha-Amino Acids.

Authors:  Carlos Cativiela; Mario Ordóñez
Journal:  Tetrahedron Asymmetry       Date:  2009-01-30

3.  A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids.

Authors:  Nurit Haspel; Jie Zheng; Carlos Aleman; David Zanuy; Ruth Nussinov
Journal:  Methods Mol Biol       Date:  2017

4.  Conformational preferences of alpha-substituted proline analogues.

Authors:  Alejandra Flores-Ortega; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán; Jordi Casanovas
Journal:  J Org Chem       Date:  2008-03-20       Impact factor: 4.354

5.  Conformational preferences of beta- and gamma-aminated proline analogues.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

6.  Intrinsic conformational preferences of C(alpha,alpha)-dibenzylglycine.

Authors:  Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Org Chem       Date:  2008-05-09       Impact factor: 4.354

7.  Protein segments with conformationally restricted amino acids can control supramolecular organization at the nanoscale.

Authors:  David Zanuy; Gema Ballano; Ana I Jiménez; Jordi Casanovas; Nurit Haspel; Carlos Cativiela; David Curcó; Ruth Nussinov; Carlos Alemán
Journal:  J Chem Inf Model       Date:  2009-07       Impact factor: 4.956

8.  Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences.

Authors:  Anthony J Metrano; Nadia C Abascal; Brandon Q Mercado; Eric K Paulson; Anna E Hurtley; Scott J Miller
Journal:  J Am Chem Soc       Date:  2016-12-28       Impact factor: 15.419

  8 in total

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