Literature DB >> 16535340

Automated systems for identification of heterotrophic marine bacteria on the basis of their Fatty Acid composition.

S Bertone, M Giacomini, C Ruggiero, C Piccarolo, L Calegari.   

Abstract

The fatty acid methyl ester composition of a total of 71 marine strains representing the genera Alteromonas, Deleya, Oceanospirillum, and Vibrio was determined by gas-liquid chromatographic analysis. Over 70 different fatty acids were found. The predominant fatty acids were 16:0, 16:1 cis 9, summed-in-feature (SIF) 4 (15:0 iso 2OH and/or 16:1 trans 9) and SIF 7 (18:1 cis 11, 18:1 trans 9, and/or 18:1 trans 6) for all the strains considered, but minor quantitative variations could be used to distinguish the different genera. In addition to a conventional statistical processing method to analyze the data and draw comparison between species and genera, an approach involving neutral network-based elaboration is applied. The statistical analysis and dendrogram representation gave a comparison of the species considered, while the neural network computation provided a more accurate assignment of species to their genera. Moreover, by using neural networks, it was possible to conclude that only 22 fatty acids were important for the identification of the marine genera considered. A database of Alteromonas, Deleya, Oceanospirillum, and Vibrio fatty acid methyl ester profiles was generated and is now routinely used to identify fresh marine isolates.

Entities:  

Year:  1996        PMID: 16535340      PMCID: PMC1388878          DOI: 10.1128/aem.62.6.2122-2132.1996

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  11 in total

1.  Use of the API rapid NFT system for identifying nonfermentative and fermentative marine bacteria.

Authors:  T S Breschel; F L Singleton
Journal:  Appl Environ Microbiol       Date:  1992-01       Impact factor: 4.792

2.  Identification of clinical isolates of gram-negative nonfermentative bacteria by an automated cellular fatty acid identification system.

Authors:  G J Osterhout; V H Shull; J D Dick
Journal:  J Clin Microbiol       Date:  1991-09       Impact factor: 5.948

3.  Optimal data processing procedure for automatic bacterial identification by gas-liquid chromatography of cellular fatty acids.

Authors:  E Eerola; O P Lehtonen
Journal:  J Clin Microbiol       Date:  1988-09       Impact factor: 5.948

4.  Chemotaxonomic fatty-acid fingerprints of some streptococci with subsequent statistical analysis.

Authors:  D B Drucker
Journal:  Can J Microbiol       Date:  1974-12       Impact factor: 2.419

5.  Gas chromatography of bacterial whole cell methanolysates; VI. Fatty acid composition of strains within Micrococcaceae;.

Authors:  E Jantzen; T Bergan; K Bovre
Journal:  Acta Pathol Microbiol Scand B Microbiol Immunol       Date:  1974-12

6.  Lipids in bacterial taxonomy - a taxonomist's view.

Authors:  M P Lechevalier
Journal:  CRC Crit Rev Microbiol       Date:  1977

7.  Gas chromatography of bacterial whole cell methanolysates; V. Fatty acid composition of Neisseriae and Moraxellae.

Authors:  E Jantzen; K Bryn; T Bergan; K Bovre
Journal:  Acta Pathol Microbiol Scand B Microbiol Immunol       Date:  1974-12

8.  Fatty acid patterns in the classification of some representatives of the families Enterobacteriaceae and Vibrionaceae.

Authors:  B Bøe; J Gjerde
Journal:  J Gen Microbiol       Date:  1980-01

9.  Genome and fatty acid analysis of Pseudomonas stutzeri.

Authors:  P B Rainey; I P Thompson; N J Palleroni
Journal:  Int J Syst Bacteriol       Date:  1994-01

10.  CLASSIFICATION OF MICROORGANISMS BY ANALYSIS OF CHEMICAL COMPOSITION. I. FEASIBILITY OF UTILIZING GAS CHROMATOGRAPHY.

Authors:  K ABEL; H DESCHMERTZING; J I PETERSON
Journal:  J Bacteriol       Date:  1963-05       Impact factor: 3.490

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  6 in total

1.  Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities.

Authors:  P A Noble; J S Almeida; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

Review 2.  Biodiversity of vibrios.

Authors:  Fabiano L Thompson; Tetsuya Iida; Jean Swings
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

3.  Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA.

Authors:  P A Noble; K D Bidle; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

4.  Evaluating the Bacterial Diversity from the Southwest Coast of India Using Fatty Acid Methyl Ester Profiles.

Authors:  Maria Juviann Isaacs; Dineshram Ramadoss; Ashutosh Shankar Parab; Cathrine Sumathi Manohar
Journal:  Curr Microbiol       Date:  2021-01-04       Impact factor: 2.188

5.  Changes in Cellular States of the Marine Bacterium Deleya aquamarina under Starvation Conditions.

Authors:  F Joux; P Lebaron; M Troussellier
Journal:  Appl Environ Microbiol       Date:  1997-07       Impact factor: 4.792

6.  Synchronous effects of temperature, hydrostatic pressure, and salinity on growth, phospholipid profiles, and protein patterns of four Halomonas species isolated from deep-sea hydrothermal-vent and sea surface environments.

Authors:  Jonathan Z Kaye; John A Baross
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

  6 in total

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