Literature DB >> 16514139

From genomes to function: haloarchaea as model organisms.

Jörg Soppa1.   

Abstract

Haloarchaea are adapted to high-salt environments and accumulate equally high salt concentrations in the cytoplasm. The genomes of representatives of six haloarchaeal genera have been fully or partially sequenced, allowing the analysis of haloarchaeal properties in silico. Transcriptome and proteome analyses have been established for Halobacterium salinarum and Haloferax volcanii. Genetic systems are available including methods that allow the fast in-frame deletion or modification of chromosomal genes. The high-efficiency transformation system of Hf. volcanii allows the isolation of genes essential for a biological process by complementation of loss-of-function mutants. For the analysis of haloarchaeal biology many molecular genetic, biochemical, structural and cell biological methods have been adapted to application at high salt concentrations. Recently it has become clear that several different mechanisms allow the adaptation of proteins to the high salt concentration of the cytoplasm. Taken together, the wealth of techniques available make haloarchaea excellent archaeal model species.

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Year:  2006        PMID: 16514139     DOI: 10.1099/mic.0.28504-0

Source DB:  PubMed          Journal:  Microbiology (Reading)        ISSN: 1350-0872            Impact factor:   2.777


  51 in total

Review 1.  Archaea--timeline of the third domain.

Authors:  Ricardo Cavicchioli
Journal:  Nat Rev Microbiol       Date:  2010-12-06       Impact factor: 60.633

2.  Global phylogeography of chitinase genes in aquatic metagenomes.

Authors:  Sara Beier; Christopher M Jones; Vani Mohit; Sara Hallin; Stefan Bertilsson
Journal:  Appl Environ Microbiol       Date:  2010-11-29       Impact factor: 4.792

3.  An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii.

Authors:  Reena R Mackwan; Geraldine T Carver; John W Drake; Dennis W Grogan
Journal:  Genetics       Date:  2006-12-28       Impact factor: 4.562

4.  Searching for species in haloarchaea.

Authors:  R Thane Papke; Olga Zhaxybayeva; Edward J Feil; Katrin Sommerfeld; Denise Muise; W Ford Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-21       Impact factor: 11.205

5.  Hydrophobic carboxy-terminal residues dramatically reduce protein levels in the haloarchaeon Haloferax volcanii.

Authors:  Christopher J Reuter; Sivakumar Uthandi; Jose A Puentes; Julie A Maupin-Furlow
Journal:  Microbiology (Reading)       Date:  2009-10-22       Impact factor: 2.777

6.  Overexpression and purification of halophilic proteins in Haloferax volcanii.

Authors:  Thorsten Allers
Journal:  Bioeng Bugs       Date:  2010-03-17

7.  Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.

Authors:  Gina L Lipscomb; Karen Stirrett; Gerrit J Schut; Fei Yang; Francis E Jenney; Robert A Scott; Michael W W Adams; Janet Westpheling
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

8.  Shotgun proteomics of the haloarchaeon Haloferax volcanii.

Authors:  P Aaron Kirkland; Matthew A Humbard; Charles J Daniels; Julie A Maupin-Furlow
Journal:  J Proteome Res       Date:  2008-09-25       Impact factor: 4.466

Review 9.  Sculpting the bacterial cell.

Authors:  William Margolin
Journal:  Curr Biol       Date:  2009-09-15       Impact factor: 10.834

10.  The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation.

Authors:  Jody A Winter; Panayiotis Christofi; Shaun Morroll; Karen A Bunting
Journal:  BMC Struct Biol       Date:  2009-08-22
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