Literature DB >> 16513776

Recognition imaging with a DNA aptamer.

Liyun Lin1, Hongda Wang, Yan Liu, Hao Yan, Stuart Lindsay.   

Abstract

We have used a DNA-aptamer tethered to an atomic force microscope probe to carry out recognition imaging of IgE molecules attached to a mica substrate. The recognition was efficient (approximately 90%) and specific, being blocked by injection of IgE molecules in solution, and not being interfered with by high concentrations of a second protein. The signal/noise ratio of the recognition signal was better than that obtained with antibodies, despite the fact that the average force required to break the aptamer-protein bonds was somewhat smaller.

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Year:  2006        PMID： 16513776      PMCID： PMC1459510          DOI： 10.1529/biophysj.105.079111

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  10 in total

1.  Specific aptamer-protein interaction studied by atomic force microscopy.

Authors:  Yaxin Jiang; Chuanfeng Zhu; Liansheng Ling; Lijun Wan; Xiaohong Fang; Chunli Bai
Journal:  Anal Chem       Date:  2003-05-01       Impact factor: 6.986

2.  Single-molecule recognition imaging microscopy.

Authors:  C Stroh; H Wang; R Bash; B Ashcroft; J Nelson; H Gruber; D Lohr; S M Lindsay; P Hinterdorfer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

3.  Simultaneous topography and recognition imaging using force microscopy.

Authors:  Cordula M Stroh; Andreas Ebner; Manfred Geretschläger; Günter Freudenthaler; Ferry Kienberger; A S M Kamruzzahan; Sandra J Smith-Gill; Hermann J Gruber; Peter Hinterdorfer
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

4.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

Authors:  C Tuerk; L Gold
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

5.  In vitro selection of RNA molecules that bind specific ligands.

Authors:  A D Ellington; J W Szostak
Journal:  Nature       Date:  1990-08-30       Impact factor: 49.962

6.  Imaging crystals, polymers, and processes in water with the atomic force microscope.

Authors:  B Drake; C B Prater; A L Weisenhorn; S A Gould; T R Albrecht; C F Quate; D S Cannell; H G Hansma; P K Hansma
Journal:  Science       Date:  1989-03-24       Impact factor: 47.728

7.  Detection and localization of individual antibody-antigen recognition events by atomic force microscopy.

Authors:  P Hinterdorfer; W Baumgartner; H J Gruber; K Schilcher; H Schindler
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-16       Impact factor: 11.205

8.  Single molecule recognition of protein binding epitopes in brush border membranes by force microscopy.

Authors:  Susanne Wielert-Badt; Peter Hinterdorfer; Hermann J Gruber; Jiann-Trzuo Lin; Dirk Badt; Barbara Wimmer; Hansgeorg Schindler; Rolf K-H Kinne
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

9.  Glutaraldehyde modified mica: a new surface for atomic force microscopy of chromatin.

Authors:  Hongda Wang; Ralph Bash; Jiya G Yodh; Gordon L Hager; D Lohr; Stuart M Lindsay
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

10.  High-affinity oligonucleotide ligands to human IgE inhibit binding to Fc epsilon receptor I.

Authors:  T W Wiegand; P B Williams; S C Dreskin; M H Jouvin; J P Kinet; D Tasset
Journal:  J Immunol       Date:  1996-07-01       Impact factor: 5.422
  10 in total
  16 in total

1.  Single molecule transcription profiling with AFM.

Authors:  Jason Reed; Bud Mishra; Bede Pittenger; Sergei Magonov; Joshua Troke; Michael A Teitell; James K Gimzewski
Journal:  Nanotechnology       Date:  2007-05-09       Impact factor: 3.874

2.  Antibody-unfolding and metastable-state binding in force spectroscopy and recognition imaging.

Authors:  Parminder Kaur; Alexander Fuhrmann; Robert Ros; Linda Obenauer Kutner; Lumelle A Schneeweis; Ryman Navoa; Kirby Steger; Lei Xie; Christopher Yonan; Ralph Abraham; Michael J Grace; Stuart Lindsay
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

3.  Using atomic force microscopy to study chromatin structure and nucleosome remodeling.

Authors:  D Lohr; R Bash; H Wang; J Yodh; S Lindsay
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

4.  In vitro selection of histone H4 aptamers for recognition imaging microscopy.

Authors:  Liyun Lin; Doris Hom; Stuart M Lindsay; John C Chaput
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

Review 5.  Aptamers in immunotherapy.

Authors:  Claudia M Dollins; Smita Nair; Bruce A Sullenger
Journal:  Hum Gene Ther       Date:  2008-05       Impact factor: 5.695

6.  Recognition imaging of acetylated chromatin using a DNA aptamer.

Authors:  Liyun Lin; Qiang Fu; Berea A R Williams; Abdelhamid M Azzaz; Michael A Shogren-Knaak; John C Chaput; Stuart Lindsay
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

7.  A total internal reflection ellipsometry and atomic force microscopy study of interactions between Proteus mirabilis lipopolysaccharides and antibodies.

Authors:  J Gleńska-Olender; S Sęk; K Dworecki; W Kaca
Journal:  Eur Biophys J       Date:  2015-04-09       Impact factor: 1.733

Review 8.  Surface enhanced Raman scattering (SERS) based biomicrofluidics systems for trace protein analysis.

Authors:  Chun-Wei Lee; Fan-Gang Tseng
Journal:  Biomicrofluidics       Date:  2018-01-23       Impact factor: 2.800

9.  Single-epitope recognition imaging of native chromatin.

Authors:  Hongda Wang; Yamini Dalal; Steven Henikoff; Stuart Lindsay
Journal:  Epigenetics Chromatin       Date:  2008-12-17       Impact factor: 4.954

10.  Selection of DNA aptamers using atomic force microscopy.

Authors:  Yusuke Miyachi; Nobuaki Shimizu; Chiaki Ogino; Akihiko Kondo
Journal:  Nucleic Acids Res       Date:  2009-12-02       Impact factor: 16.971
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