Literature DB >> 16511257

Purification, crystallization and X-ray diffraction analysis of dihydropyrimidinase from Dictyostelium discoideum.

Bernhard Lohkamp1, Birgit Andersen, Jure Piskur, Doreen Dobritzsch.   

Abstract

Dihydropyrimidinase (EC 3.5.2.2) is the second enzyme in the reductive pyrimidine-degradation pathway and catalyses the hydrolysis of 5,6-dihydrouracil and 5,6-dihydrothymine to the corresponding N-carbamylated beta-amino acids. The recombinant enzyme from the slime mould Dictyostelium discoideum was overexpressed, purified and crystallized by the vapour-diffusion method. One crystal diffracted to better than 1.8 A resolution on a synchrotron source and was shown to belong to space group I222, with unit-cell parameters a = 84.6, b = 89.6, c = 134.9 A and one molecule in the asymmetric unit.

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Year:  2005        PMID: 16511257      PMCID: PMC2150923          DOI: 10.1107/S174430910503976X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  Dihydropyrimidine amidohydrolases and dihydroorotases share the same origin and several enzymatic properties.

Authors:  Zoran Gojkovic; Lise Rislund; Birgit Andersen; Michael P B Sandrini; Paul F Cook; Klaus D Schnackerz; Jure Piskur
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

2.  PYD2 encodes 5,6-dihydropyrimidine amidohydrolase, which participates in a novel fungal catabolic pathway.

Authors:  Z Gojkovic; K Jahnke; K D Schnackerz; J Piskur
Journal:  J Mol Biol       Date:  2000-01-28       Impact factor: 5.469

3.  Crystallization and X-ray diffraction analysis of dihydropyrimidinase from Saccharomyces kluyveri.

Authors:  Doreen Dobritzsch; Birgit Andersen; Jure Piskur
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-12

4.  Identification of the structural similarity in the functionally related amidohydrolases acting on the cyclic amide ring.

Authors:  G J Kim; H S Kim
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

5.  Behavior of opposing pathways of thymidine utilization in differentiating, regenerating, and neoplastic liver.

Authors:  J A Ferdinandus; H P Morris; G Weber
Journal:  Cancer Res       Date:  1971-05       Impact factor: 12.701

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 7.  Inborn errors of pyrimidine degradation: clinical, biochemical and molecular aspects.

Authors:  A H van Gennip; N G Abeling; P Vreken; A B van Kuilenburg
Journal:  J Inherit Metab Dis       Date:  1997-06       Impact factor: 4.982

Review 8.  Degradation of pyrimidines and pyrimidine analogs--pathways and mutual influences.

Authors:  C Wasternack
Journal:  Pharmacol Ther       Date:  1980       Impact factor: 12.310

9.  Eukaryotic beta-alanine synthases are functionally related but have a high degree of structural diversity.

Authors:  Z Gojković; M P Sandrini; J Piskur
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

10.  beta-Alanine, a possible neurotransmitter in the visual system?

Authors:  M Sandberg; I Jacobson
Journal:  J Neurochem       Date:  1981-11       Impact factor: 5.372

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