Literature DB >> 16508095

Crystallization and preliminary diffraction analysis of a group I ribozyme from bacteriophage Twort.

Elaine Chase1, Barbara L Golden.   

Abstract

Group I introns are catalytic RNAs that are capable of performing a variety of phosphotransesterification reactions including self-splicing and RNA cleavage. The reactions are efficient, accurate and dependent only on the presence of guanosine-nucleotide substrate and sufficient magnesium ion to stabilize the structure of the RNA. To understand how the group I intron active-site facilitates catalysis, crystals of a 242-nucleotide ribozyme bound to a four-nucleotide product RNA have been produced that diffract to 3.6 A resolution. The space group of these crystals is I2(1)2(1)2(1) and the unit-cell parameters are a = 94.6, b = 141.0, c = 210.9 A. A single heavy-atom derivative has been synthesized by covalent modification of the product RNA with iodine.

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Year:  2004        PMID: 16508095      PMCID: PMC1952367          DOI: 10.1107/S1744309104028337

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions.

Authors:  K Juneau; E Podell; D J Harrington; T R Cech
Journal:  Structure       Date:  2001-03-07       Impact factor: 5.006

Review 2.  RNA crystallization.

Authors:  Barbara L Golden; Craig E Kundrot
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

3.  Group I intron self-splicing with adenosine: evidence for a single nucleoside-binding site.

Authors:  M D Been; A T Perrotta
Journal:  Science       Date:  1991-04-19       Impact factor: 47.728

4.  The guanosine binding site of the Tetrahymena ribozyme.

Authors:  F Michel; M Hanna; R Green; D P Bartel; J W Szostak
Journal:  Nature       Date:  1989-11-23       Impact factor: 49.962

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes.

Authors:  A J Zaug; C A Grosshans; T R Cech
Journal:  Biochemistry       Date:  1988-12-13       Impact factor: 3.162

7.  Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes.

Authors:  M Landthaler; D A Shub
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

8.  Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction.

Authors:  S Shan ; A V Kravchuk; J A Piccirilli; D Herschlag
Journal:  Biochemistry       Date:  2001-05-01       Impact factor: 3.162

9.  Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site.

Authors:  D Herschlag; T R Cech
Journal:  Biochemistry       Date:  1990-11-06       Impact factor: 3.162

10.  Crystal structure of a self-splicing group I intron with both exons.

Authors:  Peter L Adams; Mary R Stahley; Anne B Kosek; Jimin Wang; Scott A Strobel
Journal:  Nature       Date:  2004-06-02       Impact factor: 49.962

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  1 in total

1.  Preparation of group I introns for biochemical studies and crystallization assays by native affinity purification.

Authors:  Quentin Vicens; Anne R Gooding; Luis F Duarte; Robert T Batey
Journal:  PLoS One       Date:  2009-08-27       Impact factor: 3.240

  1 in total

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