Literature DB >> 12718923

RNA crystallization.

Barbara L Golden1, Craig E Kundrot.   

Abstract

RNA molecules may be crystallized using variations of the methods developed for protein crystallography. As the technology has become available to synthesize and purify RNA molecules in the quantities and with the quality that is required for crystallography, the field of RNA structure has exploded. The first consideration when crystallizing an RNA is the sequence, which may be varied in a rational way to enhance crystallizability or prevent formation of alternate structures. Once a sequence has been designed, the RNA may be synthesized chemically by solid-state synthesis or it may be produced enzymatically using RNA polymerase and an appropriate DNA template. Purification of milligram quantities of RNA can be accomplished by HPLC or gel electrophoresis. As with proteins, crystallization of RNA is usually accomplished by vapor diffusion techniques. There are several considerations that are either unique to RNA crystallization or more important for RNA crystallization. Techniques for design, synthesis, purification, and crystallization of RNAs will be reviewed here.

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Year:  2003        PMID: 12718923     DOI: 10.1016/s1047-8477(03)00042-x

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  12 in total

1.  Crystal structure of an RNA polymerase ribozyme in complex with an antibody fragment.

Authors:  Joseph A Piccirilli; Yelena Koldobskaya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

2.  Crystallization and preliminary diffraction analysis of a group I ribozyme from bacteriophage Twort.

Authors:  Elaine Chase; Barbara L Golden
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2004-11-09

3.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

4.  Determining structures of RNA aptamers and riboswitches by X-ray crystallography.

Authors:  Andrea L Edwards; Andrew D Garst; Robert T Batey
Journal:  Methods Mol Biol       Date:  2009

5.  Solution structure of RNase P RNA.

Authors:  Alexei V Kazantsev; Robert P Rambo; Sina Karimpour; John Santalucia; John A Tainer; Norman R Pace
Journal:  RNA       Date:  2011-04-29       Impact factor: 4.942

Review 6.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

7.  Soaking Hexammine Cations into RNA Crystals to Obtain Derivatives for Phasing Diffraction Data.

Authors:  Robert T Batey; Jeffrey S Kieft
Journal:  Methods Mol Biol       Date:  2016

Review 8.  Exploring ribozyme conformational changes with X-ray crystallography.

Authors:  Robert C Spitale; Joseph E Wedekind
Journal:  Methods       Date:  2009-06-24       Impact factor: 3.608

9.  A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination.

Authors:  Yelena Koldobskaya; Erica M Duguid; David M Shechner; Nikolai B Suslov; Jingdong Ye; Sachdev S Sidhu; David P Bartel; Shohei Koide; Anthony A Kossiakoff; Joseph A Piccirilli
Journal:  Nat Struct Mol Biol       Date:  2010-12-12       Impact factor: 15.369

10.  Key labeling technologies to tackle sizeable problems in RNA structural biology.

Authors:  Kwaku T Dayie
Journal:  Int J Mol Sci       Date:  2008-07-14       Impact factor: 6.208

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