Literature DB >> 16502

Computer simulation of energy metabolism in anoxic perfused rat heart.

M J Achs, D Garfinkel.   

Abstract

We have modeled the energy metabolism of the perfused rat heart in order to elucidate the interaction of physiological and biochemical control mechanisms. This model which includes glycolysis, the Krebs cycle, and related metabolism, contains 68 submodels of individual enzymes and transport mechanisms including both cytosolic and mitochondrial reactions. The method of model construction, which relies heavily on fitting observed in situ behavior to known algebraic rate laws for isolated enzymes, and its data requirements and necessary assumptions are described. Simulation of a CO-induced anoxic preparation is described in detail. Here glycolysis increases sharply, due to both increased glucose uptake and phosphorylase activation (there is rapid interconversion between a and b forms, both of which are active here); this causes a damped glycolytic oscillation originating with the glycogen-handling enzymes rather than phosphofructokinase. The behavior and physiological consequences of ATPase activity and of a lactate permease which exports lactate to the perfusate are discussed.

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Year:  1977        PMID: 16502     DOI: 10.1152/ajpregu.1977.232.5.R164

Source DB:  PubMed          Journal:  Am J Physiol        ISSN: 0002-9513


  10 in total

Review 1.  The Cardiome Project. An integrated view of cardiac metabolism and regional mechanical function.

Authors:  J B Bassingthwaighte; H Qian; Z Li
Journal:  Adv Exp Med Biol       Date:  1999       Impact factor: 2.622

Review 2.  The computational integrated myocyte: a view into the virtual heart.

Authors:  James B Bassingthwaighte; Kalyan C Vinnakota
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

3.  Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kinetics.

Authors:  Kalyan Vinnakota; Melissa L Kemp; Martin J Kushmerick
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

4.  Blood flows and metabolic components of the cardiome.

Authors:  J B Bassingthwaighte; Z Li; H Qian
Journal:  Prog Biophys Mol Biol       Date:  1998       Impact factor: 3.667

5.  Thermodynamics of the control of metabolism.

Authors:  H V Westerhoff; P J Plomp; A K Groen; R J Wanders
Journal:  Cell Biophys       Date:  1987-12

Review 6.  Through the microcirculatory maze with machete, molecule, and minicomputer (1986 Alza lecture).

Authors:  J B Bassingthwaighte
Journal:  Ann Biomed Eng       Date:  1987       Impact factor: 3.934

Review 7.  Integrative modeling of the cardiac ventricular myocyte.

Authors:  Raimond L Winslow; Sonia Cortassa; Brian O'Rourke; Yasmin L Hashambhoy; John Jeremy Rice; Joseph L Greenstein
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-09-23

Review 8.  Computational modeling of mitochondrial energy transduction.

Authors:  J P J Schmitz; J Vanlier; N A W van Riel; Jeroen A L Jeneson
Journal:  Crit Rev Biomed Eng       Date:  2011

9.  Computational functions in biochemical reaction networks.

Authors:  A Arkin; J Ross
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

10.  Computational studies of the effects of myocardial blood flow reductions on cardiac metabolism.

Authors:  Jennifer E Salem; William C Stanley; Marco E Cabrera
Journal:  Biomed Eng Online       Date:  2004-06-02       Impact factor: 2.819

  10 in total

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