Literature DB >> 20829821

The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

Florian Leitner1, Andrew Chatr-aryamontri, Scott A Mardis, Arnaud Ceol, Martin Krallinger, Luana Licata, Lynette Hirschman, Gianni Cesareni, Alfonso Valencia.   

Abstract

Mesh：

Year:  2010        PMID： 20829821     DOI： 10.1038/nbt0910-897

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  An Overview of BioCreative II.5.

Authors:  Florian Leitner; Scott A Mardis; Martin Krallinger; Gianni Cesareni; Lynette A Hirschman; Alfonso Valencia
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Jul-Sep       Impact factor: 3.710

Review 2.  Structural systems biology: modelling protein interactions.

Authors:  Patrick Aloy; Robert B Russell
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

3.  Text mining: powering the database revolution.

Authors:  Udo Hahn; Joachim Wermter; Rainer Blasczyk; Peter A Horn
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

Review 4.  A text-mining perspective on the requirements for electronically annotated abstracts.

Authors:  Florian Leitner; Alfonso Valencia
Journal:  FEBS Lett       Date:  2008-03-06       Impact factor: 4.124

Review 5.  Linking entries in protein interaction database to structured text: the FEBS Letters experiment.

Authors:  Arnaud Ceol; Andrew Chatr-Aryamontri; Luana Licata; Gianni Cesareni
Journal:  FEBS Lett       Date:  2008-03-06       Impact factor: 4.124

6.  Structured digital abstract makes text mining easy.

Authors:  Mark Gerstein; Michael Seringhaus; Stanley Fields
Journal:  Nature       Date:  2007-05-10       Impact factor: 49.962

Review 7.  The minimum information required for reporting a molecular interaction experiment (MIMIx).

Authors:  Sandra Orchard; Lukasz Salwinski; Samuel Kerrien; Luisa Montecchi-Palazzi; Matthias Oesterheld; Volker Stümpflen; Arnaud Ceol; Andrew Chatr-aryamontri; John Armstrong; Peter Woollard; John J Salama; Susan Moore; Jérôme Wojcik; Gary D Bader; Marc Vidal; Michael E Cusick; Mark Gerstein; Anne-Claude Gavin; Giulio Superti-Furga; Jack Greenblatt; Joel Bader; Peter Uetz; Mike Tyers; Pierre Legrain; Stan Fields; Nicola Mulder; Michael Gilson; Michael Niepmann; Lyle Burgoon; Javier De Las Rivas; Carlos Prieto; Victoria M Perreau; Chris Hogue; Hans-Werner Mewes; Rolf Apweiler; Ioannis Xenarios; David Eisenberg; Gianni Cesareni; Henning Hermjakob
Journal:  Nat Biotechnol       Date:  2007-08       Impact factor: 54.908

8.  MINT: the Molecular INTeraction database.

Authors:  Andrew Chatr-aryamontri; Arnaud Ceol; Luisa Montecchi Palazzi; Giuliano Nardelli; Maria Victoria Schneider; Luisa Castagnoli; Gianni Cesareni
Journal:  Nucleic Acids Res       Date:  2006-11-29       Impact factor: 16.971

9.  Publishing perishing? Towards tomorrow's information architecture.

Authors:  Michael R Seringhaus; Mark B Gerstein
Journal:  BMC Bioinformatics       Date:  2007-01-19       Impact factor: 3.169
  9 in total
  24 in total

1.  Interaction databases on the same page.

Authors:  Andrei L Turinsky; Sabry Razick; Brian Turner; Ian M Donaldson; Shoshana J Wodak
Journal:  Nat Biotechnol       Date:  2011-05       Impact factor: 54.908

Review 2.  Text-mining solutions for biomedical research: enabling integrative biology.

Authors:  Dietrich Rebholz-Schuhmann; Anika Oellrich; Robert Hoehndorf
Journal:  Nat Rev Genet       Date:  2012-11-14       Impact factor: 53.242

3.  Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.

Authors:  Sandra Orchard; Samuel Kerrien; Sara Abbani; Bruno Aranda; Jignesh Bhate; Shelby Bidwell; Alan Bridge; Leonardo Briganti; Fiona S L Brinkman; Fiona Brinkman; Gianni Cesareni; Andrew Chatr-aryamontri; Emilie Chautard; Carol Chen; Marine Dumousseau; Johannes Goll; Robert E W Hancock; Robert Hancock; Linda I Hannick; Igor Jurisica; Jyoti Khadake; David J Lynn; Usha Mahadevan; Livia Perfetto; Arathi Raghunath; Sylvie Ricard-Blum; Bernd Roechert; Lukasz Salwinski; Volker Stümpflen; Mike Tyers; Peter Uetz; Ioannis Xenarios; Henning Hermjakob
Journal:  Nat Methods       Date:  2012-04       Impact factor: 28.547

4.  Toward an interactive article: integrating journals and biological databases.

Authors:  Arun Rangarajan; Tim Schedl; Karen Yook; Juancarlos Chan; Stephen Haenel; Lolly Otis; Sharon Faelten; Tracey DePellegrin-Connelly; Ruth Isaacson; Marek S Skrzypek; Steven J Marygold; Raymund Stefancsik; J Michael Cherry; Paul W Sternberg; Hans-Michael Müller
Journal:  BMC Bioinformatics       Date:  2011-05-19       Impact factor: 3.169

5.  Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.

Authors:  Jose M G Izarzugaza; Martin Krallinger; Alfonso Valencia
Journal:  Front Physiol       Date:  2012-08-22       Impact factor: 4.566

6.  Open semantic annotation of scientific publications using DOMEO.

Authors:  Paolo Ciccarese; Marco Ocana; Tim Clark
Journal:  J Biomed Semantics       Date:  2012-04-24

7.  The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Authors:  Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-Aryamontri; Andrew Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; Mike Tyers; Gerold Schneider; Fabio Rinaldi; Robert Leaman; Graciela Gonzalez; Sergio Matos; Sun Kim; W John Wilbur; Luis Rocha; Hagit Shatkay; Ashish V Tendulkar; Shashank Agarwal; Feifan Liu; Xinglong Wang; Rafal Rak; Keith Noto; Charles Elkan; Zhiyong Lu; Rezarta Islamaj Dogan; Jean-Fred Fontaine; Miguel A Andrade-Navarro; Alfonso Valencia
Journal:  BMC Bioinformatics       Date:  2011-10-03       Impact factor: 3.169

8.  MINT, the molecular interaction database: 2012 update.

Authors:  Luana Licata; Leonardo Briganti; Daniele Peluso; Livia Perfetto; Marta Iannuccelli; Eugenia Galeota; Francesca Sacco; Anita Palma; Aurelio Pio Nardozza; Elena Santonico; Luisa Castagnoli; Gianni Cesareni
Journal:  Nucleic Acids Res       Date:  2011-11-16       Impact factor: 16.971

9.  Jointly creating digital abstracts: dealing with synonymy and polysemy.

Authors:  Steven Vercruysse; Martin Kuiper
Journal:  BMC Res Notes       Date:  2012-10-30

Review 10.  Getting personalized cancer genome analysis into the clinic: the challenges in bioinformatics.

Authors:  Alfonso Valencia; Manuel Hidalgo
Journal:  Genome Med       Date:  2012-07-30       Impact factor: 11.117
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