Literature DB >> 16494439

Anharmonicity of amide modes.

Jianping Wang1, Robin M Hochstrasser.   

Abstract

The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16494439     DOI: 10.1021/jp0530092

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Estimating the carbonyl anharmonic vibrational frequency from affordable harmonic frequency calculations.

Authors:  Aneta Buczek; Teobald Kupka; Stephan P A Sauer; Małgorzata A Broda
Journal:  J Mol Model       Date:  2011-10-21       Impact factor: 1.810

2.  Two-dimensional infrared spectroscopy displays signatures of structural ordering in peptide aggregates.

Authors:  Casey H Londergan; Jianping Wang; Paul H Axelsen; Robin M Hochstrasser
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

3.  Two-dimensional spectroscopy at infrared and optical frequencies.

Authors:  Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

4.  Amyloid found in human cataracts with two-dimensional infrared spectroscopy.

Authors:  Ariel M Alperstein; Joshua S Ostrander; Tianqi O Zhang; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-20       Impact factor: 11.205

5.  Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Authors:  Samuel H Schneider; Huong T Kratochvil; Martin T Zanni; Steven G Boxer
Journal:  J Phys Chem B       Date:  2017-03-08       Impact factor: 2.991

6.  Coherent two dimensional infrared spectroscopy of a cyclic decapeptide antamanide. A simulation study of the amide-I and A bands.

Authors:  Cyril Falvo; Tomoyuki Hayashi; Wei Zhuang; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2008-09-09       Impact factor: 2.991

7.  The molecular pH-response mechanism of the plant light-stress sensor PsbS.

Authors:  Maithili Krishnan-Schmieden; Patrick E Konold; John T M Kennis; Anjali Pandit
Journal:  Nat Commun       Date:  2021-04-16       Impact factor: 14.919

Review 8.  Two-dimensional Infrared Spectroscopy Reveals Better Insights of Structure and Dynamics of Protein.

Authors:  Kiran Sankar Maiti
Journal:  Molecules       Date:  2021-11-16       Impact factor: 4.411

9.  2D IR photon echo study of the anharmonic coupling in the OCN region of phenyl cyanate.

Authors:  Matthew J Tucker; Yung Sam Kim; Robin M Hochstrasser
Journal:  Chem Phys Lett       Date:  2009-02-24       Impact factor: 2.328

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.