Literature DB >> 16494434

Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage.

Michelle R Bunagan1, Xi Yang, Jeffery G Saven, Feng Gai.   

Abstract

Miniproteins provide useful model systems for understanding the principles of protein folding and design. These proteins also serve as useful test cases for theories of protein folding, and their small size and ultrafast folding kinetics put them in a regime of size and time scales that is now becoming accessible to molecular dynamics simulations. Previous estimates have suggested the "speed limit" for folding is on the order of 1 mus. Here a computationally designed mutant of the 20-residue Trp-cage miniprotein, Trp2-cage, is presented. The Trp2-cage has greater stability than the parent and folds on the ultrafast time scale of 1 mICROs at room temperature, as determined from infrared temperature-jump experiments.

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Year:  2006        PMID: 16494434     DOI: 10.1021/jp055288z

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  28 in total

Review 1.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

2.  Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.

Authors:  Robert M Culik; Arnaldo L Serrano; Michelle R Bunagan; Feng Gai
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-29       Impact factor: 15.336

3.  A pre-existing hydrophobic collapse in the unfolded state of an ultrafast folding protein.

Authors:  K Hun Mok; Lars T Kuhn; Martin Goez; Iain J Day; Jasper C Lin; Niels H Andersen; P J Hore
Journal:  Nature       Date:  2007-04-11       Impact factor: 49.962

4.  The effect of charge-charge interactions on the kinetics of alpha-helix formation.

Authors:  Deguo Du; Michelle R Bunagan; Feng Gai
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

5.  Optimal salt bridge for Trp-cage stabilization.

Authors:  D Victoria Williams; Aimee Byrne; James Stewart; Niels H Andersen
Journal:  Biochemistry       Date:  2011-02-01       Impact factor: 3.162

6.  Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction.

Authors:  Michele Scian; Jasper C Lin; Isolde Le Trong; George I Makhatadze; Ronald E Stenkamp; Niels H Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

7.  Microsecond folding dynamics of apomyoglobin at acidic pH.

Authors:  Ming Xu; Olga Beresneva; Ryan Rosario; Heinrich Roder
Journal:  J Phys Chem B       Date:  2012-04-17       Impact factor: 2.991

8.  Circular permutation of a WW domain: folding still occurs after excising the turn of the folding-nucleating hairpin.

Authors:  Brandon L Kier; Jordan M Anderson; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2014-01-03       Impact factor: 15.419

9.  The Trp-cage: optimizing the stability of a globular miniprotein.

Authors:  Bipasha Barua; Jasper C Lin; Victoria D Williams; Phillip Kummler; Jonathan W Neidigh; Niels H Andersen
Journal:  Protein Eng Des Sel       Date:  2008-01-18       Impact factor: 1.650

10.  A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations.

Authors:  Fabrizio Marinelli; Fabio Pietrucci; Alessandro Laio; Stefano Piana
Journal:  PLoS Comput Biol       Date:  2009-08-07       Impact factor: 4.475

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