Literature DB >> 21956888

Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.

Robert M Culik1, Arnaldo L Serrano, Michelle R Bunagan, Feng Gai.   

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Year:  2011        PMID： 21956888      PMCID： PMC3331591          DOI： 10.1002/anie.201104085

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  65 in total

1.  Trp-cage: folding free energy landscape in explicit water.

Authors:  Ruhong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-27       Impact factor: 11.205

2.  Reproducible protein folding with the stochastic tunneling method.

Authors:  A Schug; T Herges; W Wenzel
Journal:  Phys Rev Lett       Date:  2003-10-06       Impact factor: 9.161

3.  Studies of peptides forming 3(10)- and alpha-helices and beta-bend ribbon structures in organic solution and in model biomembranes by Fourier transform infrared spectroscopy.

Authors:  D F Kennedy; M Crisma; C Toniolo; D Chapman
Journal:  Biochemistry       Date:  1991-07-02       Impact factor: 3.162

4.  Ab Initio Protein Folding Using a Cooperative Swarm of Molecular Dynamics Trajectories.

Authors:  Neil J Bruce; Richard A Bryce
Journal:  J Chem Theory Comput       Date:  2010-06-28       Impact factor: 6.006

5.  A microscopic view of miniprotein folding: enhanced folding efficiency through formation of an intermediate.

Authors:  Hannes Neuweiler; Sören Doose; Markus Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-03       Impact factor: 11.205

6.  The equilibrium properties and folding kinetics of an all-atom Go model of the Trp-cage.

Authors:  Apichart Linhananta; Jesse Boer; Ian MacKay
Journal:  J Chem Phys       Date:  2005-03-15       Impact factor: 3.488

7.  Computing the stability diagram of the Trp-cage miniprotein.

Authors:  Dietmar Paschek; Sascha Hempel; Angel E García
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

8.  Loss of dispersion energy changes the stability and folding/unfolding equilibrium of the Trp-cage protein.

Authors:  Jirí Cerný; Jirí Vondrásek; Pavel Hobza
Journal:  J Phys Chem B       Date:  2009-04-23       Impact factor: 2.991

9.  High-temperature unfolding of a trp-cage mini-protein: a molecular dynamics simulation study.

Authors:  Aswin Sai Narain Seshasayee
Journal:  Theor Biol Med Model       Date:  2005-03-11       Impact factor: 2.432

10.  Calculation of the free energy and cooperativity of protein folding.

Authors:  Alex Kentsis; Tatyana Gindin; Mihaly Mezei; Roman Osman
Journal:  PLoS One       Date:  2007-05-16       Impact factor: 3.240
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  30 in total

Review 1.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

2.  A hydrodynamic view of the first-passage folding of Trp-cage miniprotein.

Authors:  Vladimir A Andryushchenko; Sergei F Chekmarev
Journal:  Eur Biophys J       Date:  2015-11-12       Impact factor: 1.733

3.  Following easy slope paths on a free energy landscape: the case study of the Trp-cage folding mechanism.

Authors:  Fabrizio Marinelli
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

4.  Assessment of local friction in protein folding dynamics using a helix cross-linker.

Authors:  Beatrice N Markiewicz; Hyunil Jo; Robert M Culik; William F DeGrado; Feng Gai
Journal:  J Phys Chem B       Date:  2013-11-18       Impact factor: 2.991

Review 5.  Meandering Down the Energy Landscape of Protein Folding: Are We There Yet?

Authors:  Rachel M Abaskharon; Feng Gai
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

6.  Temperature evolution of Trp-cage folding pathways: An analysis by dividing the probability flux field into stream tubes.

Authors:  Vladimir A Andryushchenko; Sergei F Chekmarev
Journal:  J Biol Phys       Date:  2017-10-05       Impact factor: 1.365

7.  Unperturbed Detection of the Dynamic Structure in the Hydrophobic Core of Trp-Cage via Two-Dimensional Infrared Spectroscopy.

Authors:  Farzaneh Chalyavi; Andrew J Schmitz; Matthew J Tucker
Journal:  J Phys Chem Lett       Date:  2020-01-21       Impact factor: 6.475

8.  Effect of surfactant hydrophobicity on the pathway for unfolding of ubiquitin.

Authors:  Bryan F Shaw; Grégory F Schneider; George M Whitesides
Journal:  J Am Chem Soc       Date:  2012-10-31       Impact factor: 15.419

9.  Monitoring the folding of Trp-cage peptide by two-dimensional infrared (2DIR) spectroscopy.

Authors:  Zaizhi Lai; Nicholas K Preketes; Shaul Mukamel; Jin Wang
Journal:  J Phys Chem B       Date:  2013-04-05       Impact factor: 2.991

10.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991
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