Literature DB >> 24350581

Circular permutation of a WW domain: folding still occurs after excising the turn of the folding-nucleating hairpin.

Brandon L Kier1, Jordan M Anderson, Niels H Andersen.   

Abstract

A hyperstable Pin1 WW domain has been circularly permuted via excision of the fold-nucleating turn; it still folds to form the native three-strand sheet and hydrophobic core features. Multiprobe folding dynamics studies of the normal and circularly permuted sequences, as well as their constituent hairpin fragments and comparable-length β-strand-loop-β-strand models, indicate 2-state folding for all topologies. N-terminal hairpin formation is the fold nucleating event for the wild-type sequence; the slower folding circular permutant has a more distributed folding transition state.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24350581      PMCID: PMC4051316          DOI: 10.1021/ja410824x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  32 in total

1.  Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing.

Authors:  S H Park; M C Shastry; H Roder
Journal:  Nat Struct Biol       Date:  1999-10

2.  Structural analysis of WW domains and design of a WW prototype.

Authors:  M J Macias; V Gervais; C Civera; H Oschkinat
Journal:  Nat Struct Biol       Date:  2000-05

3.  Critical role of beta-hairpin formation in protein G folding.

Authors:  E L McCallister; E Alm; D Baker
Journal:  Nat Struct Biol       Date:  2000-08

Review 4.  WW and SH3 domains, two different scaffolds to recognize proline-rich ligands.

Authors:  Maria J Macias; Silke Wiesner; Marius Sudol
Journal:  FEBS Lett       Date:  2002-02-20       Impact factor: 4.124

5.  The effect of backbone cyclization on the thermodynamics of beta-sheet unfolding: stability optimization of the PIN WW domain.

Authors:  Songpon Deechongkit; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2002-05-08       Impact factor: 15.419

6.  WW domain sequence activity relationships identified using ligand recognition propensities of 42 WW domains.

Authors:  Livia Otte; Urs Wiedemann; Brigitte Schlegel; José Ricardo Pires; Michael Beyermann; Peter Schmieder; Gerd Krause; Rudolf Volkmer-Engert; Jens Schneider-Mergener; Hartmut Oschkinat
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

7.  Enhanced hairpin stability through loop design: the case of the protein G B1 domain hairpin.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

8.  Understanding the key factors that control the rate of beta-hairpin folding.

Authors:  Deguo Du; Yongjin Zhu; Cheng-Yen Huang; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

9.  Natural-like function in artificial WW domains.

Authors:  William P Russ; Drew M Lowery; Prashant Mishra; Michael B Yaffe; Rama Ranganathan
Journal:  Nature       Date:  2005-09-22       Impact factor: 49.962

10.  The folding mechanism of a beta-sheet: the WW domain.

Authors:  M Jäger; H Nguyen; J C Crane; J W Kelly; M Gruebele
Journal:  J Mol Biol       Date:  2001-08-10       Impact factor: 5.469

View more
  8 in total

1.  Optimization of a β-sheet-cap for long loop closure.

Authors:  Jordan M Anderson; Alexander A Shcherbakov; Brandon L Kier; Jackson Kellock; Irene Shu; Aimee L Byrne; Lisa A Eidenschink; Niels H Andersen
Journal:  Biopolymers       Date:  2017-03       Impact factor: 2.505

2.  A pH Switch for β-Sheet Protein Folding.

Authors:  Jordan M Anderson; Niels H Andersen
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-19       Impact factor: 15.336

3.  An improved capping unit for stabilizing the ends of associated β-strands.

Authors:  Jordan M Anderson; Brandon L Kier; Alexander A Shcherbakov; Niels H Andersen
Journal:  FEBS Lett       Date:  2014-11-15       Impact factor: 4.124

4.  Aryl-aryl interactions in designed peptide folds: Spectroscopic characteristics and optimal placement for structure stabilization.

Authors:  Jordan M Anderson; Brandon L Kier; Brice Jurban; Aimee Byrne; Irene Shu; Lisa A Eidenschink; Alexander A Shcherbakov; Mike Hudson; R M Fesinmeyer; Niels H Andersen
Journal:  Biopolymers       Date:  2016-06       Impact factor: 2.505

5.  Binding Interactions of Agents That Alter α-Synuclein Aggregation.

Authors:  K Sivanesam; A Byrne; M Bisaglia; L Bubacco; N Andersen
Journal:  RSC Adv       Date:  2015       Impact factor: 3.361

6.  Folding dynamics and pathways of the trp-cage miniproteins.

Authors:  Aimee Byrne; D Victoria Williams; Bipasha Barua; Stephen J Hagen; Brandon L Kier; Niels H Andersen
Journal:  Biochemistry       Date:  2014-09-16       Impact factor: 3.162

7.  Identification of novel functional mini-receptors by combinatorial screening of split-WW domains.

Authors:  Hermann Neitz; Niels Benjamin Paul; Florian R Häge; Christina Lindner; Roman Graebner; Michael Kovermann; Franziska Thomas
Journal:  Chem Sci       Date:  2022-07-14       Impact factor: 9.969

8.  Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome.

Authors:  Andrew P Marsden; Jeffrey J Hollins; Charles O'Neill; Pavel Ryzhov; Sally Higson; Carolina A T F Mendonça; Tristan O Kwan; Lee Gyan Kwa; Annette Steward; Jane Clarke
Journal:  J Mol Biol       Date:  2018-10-23       Impact factor: 5.469

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.