Literature DB >> 16494345

Absolute hydration free energy scale for alkali and halide ions established from simulations with a polarizable force field.

Guillaume Lamoureux1, Benoît Roux.   

Abstract

A polarizable potential function for the hydration of alkali and halide ions is developed on the basis of the recent SWM4-DP water model [Lamoureux, G.; MacKerell, A. D., Jr.; Roux, B. J. Chem. Phys. 2003, 119, 5185]. Induced polarization is incorporated using classical Drude oscillators that are treated as auxiliary dynamical degrees of freedom. The ions are represented as polarizable Lennard-Jones centers, whose parameters are optimized to reproduce the binding energies of gas-phase monohydrates and the hydration free energies in the bulk liquid. Systematic exploration of the parameters shows that the monohydrate binding energies can be consistent with a unique hydration free energy scale if the computed hydration free energies incorporate the contribution from the air/water interfacial electrostatic potential (-540 mV for SWM4-DP). The final model, which can satisfyingly reproduce both gas and bulk-phase properties, corresponds to an absolute scale in which the intrinsic hydration free energy of the proton is -247 kcal/mol.

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Year:  2006        PMID: 16494345     DOI: 10.1021/jp056043p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  76 in total

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5.  Thermodynamic and structural properties of methanol-water solutions using nonadditive interaction models.

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Journal:  J Comput Chem       Date:  2008-05       Impact factor: 3.376

Review 6.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

7.  On the origin of the electrostatic potential difference at a liquid-vacuum interface.

Authors:  Edward Harder; Benoît Roux
Journal:  J Chem Phys       Date:  2008-12-21       Impact factor: 3.488

Review 8.  Classical electrostatics for biomolecular simulations.

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9.  Simple electrolyte solutions: comparison of DRISM and molecular dynamics results for alkali halide solutions.

Authors:  In Suk Joung; Tyler Luchko; David A Case
Journal:  J Chem Phys       Date:  2013-01-28       Impact factor: 3.488

10.  Temperature dependence and energetics of single ions at the aqueous liquid-vapor interface.

Authors:  Shuching Ou; Sandeep Patel
Journal:  J Phys Chem B       Date:  2013-05-17       Impact factor: 2.991

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