Literature DB >> 16486410

Compression and free expansion of single DNA molecules in nanochannels.

Christian Hermann Reccius1, John Thomas Mannion, Joshua David Cross, H G Craighead.   

Abstract

We investigated compression and ensuing expansion of long DNA molecules confined in nanochannels. Transverse confinement of DNA molecules in the nanofluidic channels leads to elongation of their unconstrained equilibrium configuration. The extended molecules were compressed by electrophoretically driving them into porelike constrictions inside the nanochannels. When the electric field was turned off, the DNA strands expanded. This expansion, the dynamics of which has not previously been observable in artificial systems, is explained by a model that is a variation of de Gennes's polymer model.

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Year:  2005        PMID: 16486410     DOI: 10.1103/PhysRevLett.95.268101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  24 in total

1.  Surface charge, electroosmotic flow and DNA extension in chemically modified thermoplastic nanoslits and nanochannels.

Authors:  Franklin I Uba; Swathi R Pullagurla; Nichanun Sirasunthorn; Jiahao Wu; Sunggook Park; Rattikan Chantiwas; Yoon-Kyoung Cho; Heungjoo Shin; Steven A Soper
Journal:  Analyst       Date:  2015-01-07       Impact factor: 4.616

2.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

3.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

4.  Conformational analysis of single DNA molecules undergoing entropically induced motion in nanochannels.

Authors:  J T Mannion; C H Reccius; J D Cross; H G Craighead
Journal:  Biophys J       Date:  2006-06-15       Impact factor: 4.033

5.  Conformation, length, and speed measurements of electrodynamically stretched DNA in nanochannels.

Authors:  Christian H Reccius; Samuel M Stavis; John T Mannion; Larry P Walker; H G Craighead
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

6.  Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays.

Authors:  Walter Reisner; Niels B Larsen; Henrik Flyvbjerg; Jonas O Tegenfeldt; Anders Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

7.  Determining elasticity from single polymer dynamics.

Authors:  Folarin Latinwo; Charles M Schroeder
Journal:  Soft Matter       Date:  2014-04-07       Impact factor: 3.679

8.  Density fluctuations dispersion relationship for a polymer confined to a nanotube.

Authors:  Joshua H Carpenter; Alena Karpusenko; Junhan Pan; Shuang Fang Lim; Robert Riehn
Journal:  Appl Phys Lett       Date:  2011-06-21       Impact factor: 3.791

9.  Compression and self-entanglement of single DNA molecules under uniform electric field.

Authors:  Jing Tang; Ning Du; Patrick S Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-12       Impact factor: 11.205

10.  Nanoplumbing with 2D Metamaterials.

Authors:  Saroj Dangi; Robert Riehn
Journal:  Small       Date:  2018-12-11       Impact factor: 13.281

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