Literature DB >> 16485070

Probing DNA and RNA single molecules with a double optical tweezer.

P Mangeol1, D Côte, T Bizebard, O Legrand, U Bockelmann.   

Abstract

A double-tweezer setup is used to induce mechanical stress in systems of molecular biology. A double strand of DNA is first stretched and the data is compared to precedent experiments to check the experimental setup. Then a short foldable fragment of RNA is probed; the typical unfolding/refolding hysteresis behaviour of this kind of construction is shown and followed by a study of its elasticity and a comparison to a worm-like chain model. Eventually, we describe the unfolding of a larger RNA structure, which unfolds by multiple steps. We show that this unfolding is not reversible and that it presents numerous unfolding pathways.

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Year:  2006        PMID: 16485070     DOI: 10.1140/epje/i2005-10060-4

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  13 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Unzipping DNA with optical tweezers: high sequence sensitivity and force flips.

Authors:  U Bockelmann; Ph Thomen; B Essevaz-Roulet; V Viasnoff; F Heslot
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

3.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

4.  Dynamic force spectroscopy of protein-DNA interactions by unzipping DNA.

Authors:  Steven J Koch; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2003-07-10       Impact factor: 9.161

5.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

Review 6.  Single-molecule manipulation of nucleic acids.

Authors:  Ulrich Bockelmann
Journal:  Curr Opin Struct Biol       Date:  2004-06       Impact factor: 6.809

Review 7.  Single-molecule RNA science.

Authors:  Xiaowei Zhuang
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

8.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

Review 9.  Biological applications of optical forces.

Authors:  K Svoboda; S M Block
Journal:  Annu Rev Biophys Biomol Struct       Date:  1994

10.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

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  5 in total

1.  Probing ribosomal protein-RNA interactions with an external force.

Authors:  Pierre Mangeol; Thierry Bizebard; Claude Chiaruttini; Marc Dreyfus; Mathias Springer; Ulrich Bockelmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

Review 2.  Chromatin physics: Replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent self-scaled model.

Authors:  C Lavelle; A Benecke
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-22       Impact factor: 1.890

3.  RNA Nanoparticles as Rubber for Compelling Vessel Extravasation to Enhance Tumor Targeting and for Fast Renal Excretion to Reduce Toxicity.

Authors:  Chiran Ghimire; Hongzhi Wang; Hui Li; Mario Vieweger; Congcong Xu; Peixuan Guo
Journal:  ACS Nano       Date:  2020-09-16       Impact factor: 15.881

4.  An RNA toolbox for single-molecule force spectroscopy studies.

Authors:  Igor D Vilfan; Wiecher Kamping; Michiel van den Hout; Andrea Candelli; Susanne Hage; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2007-09-28       Impact factor: 16.971

5.  Hairpins under tension: RNA versus DNA.

Authors:  Mathilde Bercy; Ulrich Bockelmann
Journal:  Nucleic Acids Res       Date:  2015-08-31       Impact factor: 16.971

  5 in total

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