Literature DB >> 15869396

Single-molecule RNA science.

Xiaowei Zhuang1.   

Abstract

The development of single-molecule detection and manipulation has allowed us to monitor the behavior of individual biological molecules and molecular complexes in real time. This approach significantly expands our capability to characterize complex dynamics of biological processes, allowing transient intermediate states and parallel kinetic pathways to be directly observed. Exploring this capability to elucidate complex dynamics, recent single-molecule experiments on RNA folding and catalysis have improved our understanding of the folding energy landscape of RNA and allowed us to better dissect complex RNA catalytic reactions, including translation by the ribosome.

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Year:  2005        PMID: 15869396     DOI: 10.1146/annurev.biophys.34.040204.144641

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  65 in total

1.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Probing ribosomal protein-RNA interactions with an external force.

Authors:  Pierre Mangeol; Thierry Bizebard; Claude Chiaruttini; Marc Dreyfus; Mathias Springer; Ulrich Bockelmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

3.  Mapping L1 ligase ribozyme conformational switch.

Authors:  George M Giambaşu; Tai-Sung Lee; William G Scott; Darrin M York
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

4.  Probing molecular choreography through single-molecule biochemistry.

Authors:  Antoine M van Oijen; Nicholas E Dixon
Journal:  Nat Struct Mol Biol       Date:  2015-12       Impact factor: 15.369

5.  Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule.

Authors:  Alain Laederach; Inna Shcherbakova; Mike P Liang; Michael Brenowitz; Russ B Altman
Journal:  J Mol Biol       Date:  2006-03-30       Impact factor: 5.469

6.  Visualizing single molecules interacting with nuclear pore complexes by narrow-field epifluorescence microscopy.

Authors:  Weidong Yang; Siegfried M Musser
Journal:  Methods       Date:  2006-08       Impact factor: 3.608

7.  Fragmentation of oligoribonucleotides from gas-phase ion-electron reactions.

Authors:  Jiong Yang; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

8.  Multiple events on single molecules: unbiased estimation in single-molecule biophysics.

Authors:  Daniel A Koster; Chris H Wiggins; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-26       Impact factor: 11.205

9.  Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments.

Authors:  Eyal Nir; Xavier Michalet; Kambiz M Hamadani; Ted A Laurence; Daniel Neuhauser; Yevgeniy Kovchegov; Shimon Weiss
Journal:  J Phys Chem B       Date:  2006-11-09       Impact factor: 2.991

10.  Extending single molecule fluorescence observation time by amplitude-modulated excitation.

Authors:  Lydia Kisley; Wei-Shun Chang; David Cooper; Andrea P Mansur; Christy F Landes
Journal:  Methods Appl Fluoresc       Date:  2013-09-01       Impact factor: 3.009

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