Literature DB >> 15193318

Single-molecule manipulation of nucleic acids.

Ulrich Bockelmann1.   

Abstract

During the past decade, local force measurement techniques, such as atomic force microscopy and optical tweezers, were used to study the elastic properties and mechanically induced structural transitions of nucleic acids at the single-molecule level. Single-molecule manipulation has also increasingly been used to investigate DNA-dependent enzymatic processes, with implications for unfolding and modifying DNA, protein-DNA interactions, replication and transcription. Compared to classical techniques of molecular biology, single-molecule measurements avoid the need to average over a large number of events, and can thus potentially provide detailed and complementary information.

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Year:  2004        PMID: 15193318     DOI: 10.1016/j.sbi.2004.03.016

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  Dynamics of the DNA duplex formation studied by single molecule force measurements.

Authors:  U Bockelmann; P Thomen; F Heslot
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

2.  Probing ribosomal protein-RNA interactions with an external force.

Authors:  Pierre Mangeol; Thierry Bizebard; Claude Chiaruttini; Marc Dreyfus; Mathias Springer; Ulrich Bockelmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

3.  DNA overstretching transition: ionic strength effects.

Authors:  Olli Punkkinen; Per Lyngs Hansen; Ling Miao; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

Review 4.  Chromatin physics: Replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent self-scaled model.

Authors:  C Lavelle; A Benecke
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-22       Impact factor: 1.890

5.  Probing DNA and RNA single molecules with a double optical tweezer.

Authors:  P Mangeol; D Côte; T Bizebard; O Legrand; U Bockelmann
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-17       Impact factor: 1.890

6.  Predicting the rupture probabilities of molecular bonds in series.

Authors:  Gregor Neuert; Christian H Albrecht; Hermann E Gaub
Journal:  Biophys J       Date:  2007-04-27       Impact factor: 4.033

7.  Quantitative modeling and optimization of magnetic tweezers.

Authors:  Jan Lipfert; Xiaomin Hao; Nynke H Dekker
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

Review 8.  Close encounters with DNA.

Authors:  C Maffeo; J Yoo; J Comer; D B Wells; B Luan; A Aksimentiev
Journal:  J Phys Condens Matter       Date:  2014-09-19       Impact factor: 2.333

9.  Electron Paramagnetic Resonance of a Single NV Nanodiamond Attached to an Individual Biomolecule.

Authors:  Richelle M Teeling-Smith; Young Woo Jung; Nicolas Scozzaro; Jeremy Cardellino; Isaac Rampersaud; Justin A North; Marek Šimon; Vidya P Bhallamudi; Arfaan Rampersaud; Ezekiel Johnston-Halperin; Michael G Poirier; P Chris Hammel
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

10.  Strain softening in stretched DNA.

Authors:  Binquan Luan; Aleksei Aksimentiev
Journal:  Phys Rev Lett       Date:  2008-09-10       Impact factor: 9.161

  10 in total

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