Literature DB >> 16483853

Mirror image stereoisomers of the major benzo[a]pyrene N2-dG adduct are bypassed by different lesion-bypass DNA polymerases in E. coli.

Kwang Young Seo1, Arumugam Nagalingam, Shadi Miri, Jun Yin, Sushil Chandani, Alexander Kolbanovskiy, Anant Shastry, Edward L Loechler.   

Abstract

The potent mutagen/carcinogen benzo[a]pyrene (B[a]P) is metabolically activated to (+)-anti-B[a]PDE, which induces a full spectrum of mutations (e.g., G-to-T, G-to-A, -1 frameshifts, etc.) via its major adduct [+ta]-B[a]P-N2-dG. We recently showed that the dominant G-to-T mutation depends on DNA polymerase V (DNAP V), but not DNAPs IV or II, when studied in a 5'-TG sequence in E. coli. Herein we investigate what DNAPs are responsible for non-mutagenic bypass with [+ta]-B[a]P-N2-dG, along with its mirror image adduct [-ta]-B[a]P-N2-dG. Each adduct is built into a 5'-TG sequence in a single stranded M13 phage vector, which is then transformed into eight different E. coli strains containing all combinations of proficiency and deficiency in the three lesion-bypass DNAPs II, IV and V. Based on M13 progeny output, non-mutagenic bypass with [-ta]-B[a]P-N2-dG depends on DNAP IV. In contrast, non-mutagenic bypass with [+ta]-B[a]P-N2-dG depends on both DNAPs IV and V, where arguments suggest that DNAP IV is involved in dCTP insertion, while DNAP V is involved in extension of the adduct-G:C base pair. Numerous findings indicate that DNAP II has a slight inhibitory effect on the bypass of [+ta]- and [-ta]-B[a]P-N2-dG in the case of both DNAPs IV and V. In conclusion, for efficient non-mutagenic bypass (dCTP insertion) in E. coli, [+ta]-B[a]P-N2-dG requires DNAPs IV and V, [-ta]-B[a]P-N2-dG requires only DNAP IV, while DNAP II is inhibitory to both, and experiments to investigate these differences should provide insights into the mechanism and purpose of these lesion-bypass DNAPs.

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Year:  2006        PMID: 16483853     DOI: 10.1016/j.dnarep.2005.12.009

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  23 in total

Review 1.  Biological properties of single chemical-DNA adducts: a twenty year perspective.

Authors:  James C Delaney; John M Essigmann
Journal:  Chem Res Toxicol       Date:  2007-12-12       Impact factor: 3.739

2.  Y-Family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications.

Authors:  Sushil Chandani; Edward L Loechler
Journal:  J Mol Graph Model       Date:  2008-11-08       Impact factor: 2.518

Review 3.  Translesion DNA synthesis and mutagenesis in prokaryotes.

Authors:  Robert P Fuchs; Shingo Fujii
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

4.  Syntheses and characterizations of the in vivo replicative bypass and mutagenic properties of the minor-groove O2-alkylthymidine lesions.

Authors:  Qianqian Zhai; Pengcheng Wang; Qian Cai; Yinsheng Wang
Journal:  Nucleic Acids Res       Date:  2014-08-12       Impact factor: 16.971

5.  A gatekeeping function of the replicative polymerase controls pathway choice in the resolution of lesion-stalled replisomes.

Authors:  Seungwoo Chang; Karel Naiman; Elizabeth S Thrall; James E Kath; Slobodan Jergic; Nicholas E Dixon; Robert P Fuchs; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-03       Impact factor: 11.205

Review 6.  A Comprehensive View of Translesion Synthesis in Escherichia coli.

Authors:  Shingo Fujii; Robert P Fuchs
Journal:  Microbiol Mol Biol Rev       Date:  2020-06-17       Impact factor: 11.056

7.  Role of structural and energetic factors in regulating repair of a bulky DNA lesion with different opposite partner bases.

Authors:  Hong Mu; Konstantin Kropachev; Ying Chen; Hong Zhang; Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  Biochemistry       Date:  2013-08-05       Impact factor: 3.162

8.  Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli.

Authors:  Kwang Young Seo; Jun Yin; Prashant Donthamsetti; Sushil Chandani; Chui Hong Lee; Edward L Loechler
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469

9.  Architecture of y-family DNA polymerases relevant to translesion DNA synthesis as revealed in structural and molecular modeling studies.

Authors:  Sushil Chandani; Christopher Jacobs; Edward L Loechler
Journal:  J Nucleic Acids       Date:  2010-09-16

Review 10.  Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations.

Authors:  Shuang Ding; Alexander Kolbanovskiy; Alexander Durandin; Conor Crean; Vladimir Shafirovich; Suse Broyde; Nicholas E Geacintov
Journal:  Chirality       Date:  2009       Impact factor: 2.437

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