Literature DB >> 16479578

N6-methyladenine: the other methylated base of DNA.

David Ratel1, Jean-Luc Ravanat, François Berger, Didier Wion.   

Abstract

Contrary to mammalian DNA, which is thought to contain only 5-methylcytosine (m5C), bacterial DNA contains two additional methylated bases, namely N6-methyladenine (m6A), and N4-methylcytosine (m4C). However, if the main function of m5C and m4C in bacteria is protection against restriction enzymes, the roles of m6A are multiple and include, for example, the regulation of virulence and the control of many bacterial DNA functions such as the replication, repair, expression and transposition of DNA. Interestingly, even if adenine methylation is usually considered a bacterial DNA feature, the presence of m6A has been found in protist and plant DNAs. Furthermore, indirect evidence suggests the presence of m6A in mammal DNA, raising the possibility that this base has remained undetected due to the low sensitivity of the analytical methods used. This highlights the importance of considering m6A as the sixth element of DNA. Copyright 2006 Wiley Periodicals, Inc.

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Year:  2006        PMID: 16479578      PMCID: PMC2754416          DOI: 10.1002/bies.20342

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  72 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  An essential role for DNA adenine methylation in bacterial virulence.

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Journal:  Science       Date:  1999-05-07       Impact factor: 47.728

3.  Mutation selection and the natural history of cancer.

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Journal:  Nature       Date:  1975-05-15       Impact factor: 49.962

4.  Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2.

Authors:  Kazuhiko Sugimoto; Shin Takeda; Hirohiko Hirochika
Journal:  Plant J       Date:  2003-11       Impact factor: 6.417

5.  The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated.

Authors:  L S Kahng; L Shapiro
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

6.  The archaeal halophilic virus-encoded Dam-like methyltransferase M. phiCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli.

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Journal:  Mol Microbiol       Date:  2000-03       Impact factor: 3.501

7.  Macronuclear DNA of the hypotrichous ciliate Oxytricha fallax.

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Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

8.  DNA methylation pattern during the encystment of Physarum flavicomum.

Authors:  C M Zhu; H R Henney
Journal:  Biochem Cell Biol       Date:  1990-06       Impact factor: 3.626

Review 9.  Cytosine methylation and the ecology of intragenomic parasites.

Authors:  J A Yoder; C P Walsh; T H Bestor
Journal:  Trends Genet       Date:  1997-08       Impact factor: 11.639

10.  ( 6 N)methyl adenine in the nuclear DNA of a eucaryote, Tetrahymena pyriformis.

Authors:  M A Gorovsky; S Hattman; G L Pleger
Journal:  J Cell Biol       Date:  1973-03       Impact factor: 10.539

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  74 in total

1.  Use of LC-MS/MS and stable isotopes to differentiate hydroxymethyl and methyl DNA adducts from formaldehyde and nitrosodimethylamine.

Authors:  Kun Lu; Sessaly Craft; Jun Nakamura; Benjamin C Moeller; James A Swenberg
Journal:  Chem Res Toxicol       Date:  2012-01-09       Impact factor: 3.739

2.  Enzymatic deamination of the epigenetic base N-6-methyladenine.

Authors:  Siddhesh S Kamat; Hao Fan; J Michael Sauder; Stephen K Burley; Brian K Shoichet; Andrej Sali; Frank M Raushel
Journal:  J Am Chem Soc       Date:  2011-01-28       Impact factor: 15.419

3.  DNA phosphorothioation is widespread and quantized in bacterial genomes.

Authors:  Lianrong Wang; Shi Chen; Kevin L Vergin; Stephen J Giovannoni; Simon W Chan; Michael S DeMott; Koli Taghizadeh; Otto X Cordero; Michael Cutler; Sonia Timberlake; Eric J Alm; Martin F Polz; Jarone Pinhassi; Zixin Deng; Peter C Dedon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-01       Impact factor: 11.205

4.  Genome sequence of Ostreococcus tauri virus OtV-2 throws light on the role of picoeukaryote niche separation in the ocean.

Authors:  Karen D Weynberg; Michael J Allen; Ilana C Gilg; David J Scanlan; William H Wilson
Journal:  J Virol       Date:  2011-02-02       Impact factor: 5.103

5.  N6-methyldeoxyadenosine marks active transcription start sites in Chlamydomonas.

Authors:  Ye Fu; Guan-Zheng Luo; Kai Chen; Xin Deng; Miao Yu; Dali Han; Ziyang Hao; Jianzhao Liu; Xingyu Lu; Louis C Dore; Xiaocheng Weng; Quanjiang Ji; Laurens Mets; Chuan He
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

6.  Removal of N-6-methyladenine by the nucleotide excision repair pathway triggers the repair of mismatches in yeast gap-repair intermediates.

Authors:  Xiaoge Guo; Sue Jinks-Robertson
Journal:  DNA Repair (Amst)       Date:  2013-10-08

7.  The remarkable capacity for gut microbial and host interactions.

Authors:  Dorottya Nagy-Szakal; Richard Kellermayer
Journal:  Gut Microbes       Date:  2011-05-01

8.  Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

Authors:  Alissa M Goble; Zhening Zhang; J Michael Sauder; Stephen K Burley; Subramanyam Swaminathan; Frank M Raushel
Journal:  Biochemistry       Date:  2011-07-06       Impact factor: 3.162

9.  Theoretical study on the binding mechanism between N6-methyladenine and natural DNA bases.

Authors:  Qi-Xia Song; Zhen-Dong Ding; Jian-Hua Liu; Yan Li; Hai-Jun Wang
Journal:  J Mol Model       Date:  2012-11-09       Impact factor: 1.810

Review 10.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

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