Literature DB >> 16478683

High pressure macromolecular crystallography: the 140-MPa crystal structure at 2.3 A resolution of urate oxidase, a 135-kDa tetrameric assembly.

Nathalie Colloc'h1, Eric Girard, Anne-Claire Dhaussy, Richard Kahn, Isabella Ascone, Mohamed Mezouar, Roger Fourme.   

Abstract

We report the three-dimensional structure determined by high-pressure macromolecular crystallography (HPMX) of a 135-kDa homo-tetrameric enzyme, urate oxidase from Aspergillus flavus complexed with its potent inhibitor 8-azaxanthin. Urate oxidase crystals are quite sensitive to pressure, as three-dimensional order is lost at about 180 MPa. A highly complete 2.3 A resolution data set was collected at 140 MPa, close to the critical pressure. Crystal structures at atmospheric pressure and at high pressure were refined in the orthorhombic space group I222 with final crystallographic R factors 14.1% and 16.1%, respectively. The effect of pressure on temperature factors, ordered water molecules, hydrogen bond lengths, contacts, buried surface areas as well as cavity volume was investigated. Results suggest that the onset of disruption of the tetrameric assembly by pressure has been captured in the crystalline state.

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Year:  2006        PMID: 16478683     DOI: 10.1016/j.bbapap.2006.01.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

1.  Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.

Authors:  Eric Girard; Stéphane Marchal; Javier Perez; Stéphanie Finet; Richard Kahn; Roger Fourme; Guillaume Marassio; Anne-Claire Dhaussy; Thierry Prangé; Marion Giffard; Fabienne Dulin; Françoise Bonneté; Reinhard Lange; Jacques H Abraini; Mohamed Mezouar; Nathalie Colloc'h
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Maya J Pandya; Mike P Williamson
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

3.  Catalytic Mechanisms for Cofactor-Free Oxidase-Catalyzed Reactions: Reaction Pathways of Uricase-Catalyzed Oxidation and Hydration of Uric Acid.

Authors:  Donghui Wei; Xiaoqin Huang; Yan Qiao; Jingjing Rao; Lu Wang; Fei Liao; Chang-Guo Zhan
Journal:  ACS Catal       Date:  2017-06-15       Impact factor: 13.084

4.  Pressure-dependent 13C chemical shifts in proteins: origins and applications.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Mike P Williamson
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

5.  Bacterial motility measured by a miniature chamber for high-pressure microscopy.

Authors:  Masayoshi Nishiyama; Seiji Kojima
Journal:  Int J Mol Sci       Date:  2012-07-24       Impact factor: 6.208

6.  Adaptation of the base-paired double-helix molecular architecture to extreme pressure.

Authors:  Eric Girard; Thierry Prangé; Anne-Claire Dhaussy; Evelyne Migianu-Griffoni; Marc Lecouvey; Jean-Claude Chervin; Mohamed Mezouar; Richard Kahn; Roger Fourme
Journal:  Nucleic Acids Res       Date:  2007-07-07       Impact factor: 16.971

7.  Structural change in a B-DNA helix with hydrostatic pressure.

Authors:  David J Wilton; Mahua Ghosh; K V A Chary; Kazuyuki Akasaka; Mike P Williamson
Journal:  Nucleic Acids Res       Date:  2008-05-31       Impact factor: 16.971

  7 in total

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