Literature DB >> 16455925

Unique NS5b hepatitis C virus gene sequence consensus database is essential for standardization of genotype determinations in multicenter epidemiological studies.

Syria Laperche1, Karine Saune, Paul Dény, Gilles Duverlie, Sophie Alain, Marie-Laure Chaix, Catherine Gaudy, Françoise Lunel, Jean-Michel Pawlotsky, Christopher Payan, Bruno Pozzetto, Catherine Tamalet, Vincent Thibault, Sophie Vallet, Françoise Bouchardeau, Jacques Izopet, Jean-Jacques Lefrère.   

Abstract

A multicenter study of NS5b hepatitis C virus (HCV) genotype determination involving 12 laboratories demonstrates that any laboratory with expertise in sequencing techniques would be able to provide a reliable HCV genotype for clinical and epidemiological purposes as long as they are provided a consensus reference sequence database.

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Year:  2006        PMID： 16455925      PMCID： PMC1392686          DOI： 10.1128/JCM.44.2.614-616.2006

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  9 in total

1.  TRUGENE sequencing versus INNO-LiPA for sub-genotyping of HCV genotype-4.

Authors:  Abdel Rahman N Zekri; Hanaa M Alam El-Din; Abeer A Bahnassy; Amal M R El-Shehabi; Heba El-Leethy; Ashraf Omar; Hussein M Khaled
Journal:  J Med Virol       Date:  2005-03       Impact factor: 2.327

2.  Genotype distribution and molecular epidemiology of hepatitis C virus in blood donors from southeast France.

Authors:  Jean-François Cantaloube; Pierre Gallian; Houssam Attoui; Philippe Biagini; Philippe De Micco; Xavier de Lamballerie
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

3.  There are two major types of hepatitis C virus in Japan.

Authors:  N Enomoto; A Takada; T Nakao; T Date
Journal:  Biochem Biophys Res Commun       Date:  1990-08-16       Impact factor: 3.575

4.  The Los Alamos hepatitis C sequence database.

Authors:  Carla Kuiken; Karina Yusim; Laura Boykin; Russell Richardson
Journal:  Bioinformatics       Date:  2004-09-17       Impact factor: 6.937

5.  A web-based genotyping resource for viral sequences.

Authors:  Mikhail Rozanov; Uwe Plikat; Colombe Chappey; Andrey Kochergin; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

6.  Comparison of hepatitis C virus NS5b and 5' noncoding gene sequencing methods in a multicenter study.

Authors:  Syria Laperche; Françoise Lunel; Jacques Izopet; Sophie Alain; Paul Dény; Gilles Duverlie; Catherine Gaudy; Jean-Michel Pawlotsky; Jean-Christophe Plantier; Bruno Pozzetto; Vincent Thibault; François Tosetti; Jean-Jacques Lefrère
Journal:  J Clin Microbiol       Date:  2005-02       Impact factor: 5.948

7.  Phylogenetic analyses confirm the high prevalence of hepatitis C virus (HCV) type 4 in the Seine-Saint-Denis district (France) and indicate seven different HCV-4 subtypes linked to two different epidemiological patterns.

Authors:  Yoann Morice; Dominique Roulot; Véronique Grando; Jérome Stirnemann; Elyanne Gault; Vincent Jeantils; Michelle Bentata; Bernard Jarrousse; Olivier Lortholary; Coralie Pallier; Paul Dény
Journal:  J Gen Virol       Date:  2001-05       Impact factor: 3.891

8.  Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: implications for virus classification. The International HCV Collaborative Study Group.

Authors:  J Mellor; E C Holmes; L M Jarvis; P L Yap; P Simmonds
Journal:  J Gen Virol       Date:  1995-10       Impact factor: 3.891

9.  Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity.

Authors:  P Simmonds; J Mellor; T Sakuldamrongpanich; C Nuchaprayoon; S Tanprasert; E C Holmes; D B Smith
Journal:  J Gen Virol       Date:  1996-12       Impact factor: 3.891
  9 in total
  6 in total

1.  Multicenter trials need to use the same assay for hepatitis C virus viral load determination.

Authors:  Syria Laperche; Françoise Bouchardeau; Vincent Thibault; Bruno Pozzetto; Sophie Vallet; Arielle R Rosenberg; Anne-Marie Roque-Afonso; Michèle Gassin; Françoise Stoll-Keller; Pascale Trimoulet; Elyanne Gault; Bruno Chanzy; Bernard Mercier; Michel Branger; Jean-Michel Pawlotsky; Cécile Henquell; Françoise Lunel; Catherine Gaudy-Graffin; Sophie Alain; Marie-Laure Chaix; Gilles Duverlie; Jacques Izopet; Jean-Jacques Lefrère
Journal:  J Clin Microbiol       Date:  2007-10-03       Impact factor: 5.948

2.  Multicenter quality control of hepatitis C virus protease inhibitor resistance genotyping.

Authors:  Sophie Vallet; Sylvie Larrat; Syria Laperche; Hélène Le Guillou-Guillemette; Florence Legrand-Abravanel; Françoise Bouchardeau; Adeline Pivert; Cécile Henquell; Audrey Mirand; Elisabeth André-Garnier; Valérie Giordanengo; Gisèle Lagathu; Vincent Thibault; Caroline Scholtes; Evelyne Schvoerer; Catherine Gaudy-Graffin; Sarah Maylin; Pascale Trimoulet; Etienne Brochot; Sébastien Hantz; Joël Gozlan; Anne-Marie Roque-Afonso; Patrick Soussan; Jean-Christophe Plantier; Charlotte Charpentier; Stéphane Chevaliez; Philippe Colson; Vincent Mackiewicz; Lina Aguilera; Sylvain Rosec; Stéphanie Gouriou; Nelly Magnat; Françoise Lunel-Fabiani; Jacques Izopet; Patrice Morand; Christopher Payan; Jean-Michel Pawlotsky
Journal:  J Clin Microbiol       Date:  2013-02-20       Impact factor: 5.948

Review 3.  Genetic diversity of the hepatitis C virus: impact and issues in the antiviral therapy.

Authors:  H Le Guillou-Guillemette; S Vallet; C Gaudy-Graffin; C Payan; A Pivert; A Goudeau; F Lunel-Fabiani
Journal:  World J Gastroenterol       Date:  2007-05-07       Impact factor: 5.742

4.  The unique HCV genotype distribution and the discovery of a novel subtype 6u among IDUs co-infected with HIV-1 in Yunnan, China.

Authors:  Xueshan Xia; Ling Lu; Kok Keng Tee; Wenhua Zhao; Jianguo Wu; Jing Yu; Xiaojie Li; Yixiong Lin; Muhammad Mahmood Mukhtar; Curt H Hagedorn; Yutaka Takebe
Journal:  J Med Virol       Date:  2008-07       Impact factor: 2.327

5.  Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes.

Authors:  Peter T Hraber; William Fischer; William J Bruno; Thomas Leitner; Carla Kuiken
Journal:  Virol J       Date:  2006-12-14       Impact factor: 4.099

6.  Sustained virologic response to direct-acting antiviral agents predicts better outcomes in hepatitis C virus-infected patients: A retrospective study.

Authors:  GianLuca Colussi; Debora Donnini; Rosario Francesco Brizzi; Silvia Maier; Luca Valenti; Cristiana Catena; Alessandro Cavarape; Leonardo Alberto Sechi; Giorgio Soardo
Journal:  World J Gastroenterol       Date:  2019-10-28       Impact factor: 5.742
  6 in total

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