Literature DB >> 16448868

Conformational fluctuations of proteins revealed by variable pressure NMR.

Hua Li1, Kazuyuki Akasaka.   

Abstract

With the high-resolution variable-pressure NMR spectroscopy, one can study conformational fluctuations of proteins in a much wider conformational space than hitherto explored by NMR and other spectroscopic techniques. This is because a protein in solution generally exists as a dynamic mixture of conformers mutually differing in partial molar volume, and pressure can select the population of a conformer according to its relative volume. In this review, we describe how variable-pressure NMR can be used to probe conformational fluctuations of proteins in a wide conformational space from the folded to the fully unfolded structures, with actual examples. Furthermore, the newly emerging technique "NMR snapshots" expresses amply fluctuating protein structures as changes in atomic coordinates. Finally, the concept of conformational fluctuation is extended to include intermolecular association leading to amyloidosis.

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Year:  2006        PMID: 16448868     DOI: 10.1016/j.bbapap.2005.12.014

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  5 in total

1.  High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins.

Authors:  John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

Review 2.  Lessons from pressure denaturation of proteins.

Authors:  Julien Roche; Catherine A Royer
Journal:  J R Soc Interface       Date:  2018-10-03       Impact factor: 4.118

3.  Allosteric mechanisms in cytochrome P450 3A4 studied by high-pressure spectroscopy: pivotal role of substrate-induced changes in the accessibility and degree of hydration of the heme pocket.

Authors:  Dmitri R Davydov; Bradley J Baas; Stephen G Sligar; James R Halpert
Journal:  Biochemistry       Date:  2007-06-08       Impact factor: 3.162

Review 4.  Enzymes from piezophiles.

Authors:  Toshiko Ichiye
Journal:  Semin Cell Dev Biol       Date:  2018-02-01       Impact factor: 7.727

5.  Pressure adaptation of 3-isopropylmalate dehydrogenase from an extremely piezophilic bacterium is attributed to a single amino acid substitution.

Authors:  Yuki Hamajima; Takayuki Nagae; Nobuhisa Watanabe; Eiji Ohmae; Yasuyuki Kato-Yamada; Chiaki Kato
Journal:  Extremophiles       Date:  2016-02-05       Impact factor: 2.395

  5 in total

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