Literature DB >> 16446422

Manipulating phospholipids for crystallization of a membrane transport protein.

Lan Guan1, Irina N Smirnova, Gill Verner, Shushi Nagamori, Shushi Nagamoni, H Ronald Kaback.   

Abstract

Crystallization is a major bottleneck to obtaining x-ray structures of membrane proteins. By applying an established crystallization protocol for the lactose permease (LacY) of Escherichia coli, a systematic study of the effect of phospholipids (PL) on crystallization of LacY was undertaken. We observe three different crystal forms that diffract to increasingly better resolution in a manner that correlates with the concentration of copurified PL. Consistently, progressive addition of E. coli PL to delipidated LacY leads to different crystal forms. Tetragonal crystals are obtained with improved diffraction quality for a stable mutant by carefully adjusting PL content. Furthermore, crystals of good quality from wild-type LacY, a particularly difficult protein, were also obtained by using same approach. Thus, it is likely that manipulation of PL is a good strategy for predominantly hydrophobic membrane proteins like LacY.

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Year:  2006        PMID: 16446422      PMCID: PMC1413674          DOI: 10.1073/pnas.0510922103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

2.  A defined protein-detergent-lipid complex for crystallization of integral membrane proteins: The cytochrome b6f complex of oxygenic photosynthesis.

Authors:  Huamin Zhang; Genji Kurisu; Janet L Smith; William A Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

3.  Crystal structure of bacterial multidrug efflux transporter AcrB.

Authors:  Satoshi Murakami; Ryosuke Nakashima; Eiki Yamashita; Akihito Yamaguchi
Journal:  Nature       Date:  2002-10-10       Impact factor: 49.962

4.  Three-dimensional crystallization of the Escherichia coli glycerol-3-phosphate transporter: a member of the major facilitator superfamily.

Authors:  M Joanne Lemieux; Jinmei Song; Myong Jin Kim; Yafei Huang; Anthony Villa; Manfred Auer; Xiao-Dan Li; Da-Neng Wang
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

5.  Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli.

Authors:  Yafei Huang; M Joanne Lemieux; Jinmei Song; Manfred Auer; Da-Neng Wang
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

6.  Structure and mechanism of the lactose permease of Escherichia coli.

Authors:  Jeff Abramson; Irina Smirnova; Vladimir Kasho; Gillian Verner; H Ronald Kaback; So Iwata
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

7.  Intermolecular thiol cross-linking via loops in the lactose permease of Escherichia coli.

Authors:  Natalia Ermolova; Lan Guan; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-21       Impact factor: 11.205

8.  Surface-exposed positions in the transmembrane helices of the lactose permease of Escherichia coli determined by intermolecular thiol cross-linking.

Authors:  Lan Guan; Franklin D Murphy; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

9.  A mutation in the lactose permease of Escherichia coli that decreases conformational flexibility and increases protein stability.

Authors:  Irina N Smirnova; H Ronald Kaback
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

10.  Improved procedures for the determination of lipid phosphorus by malachite green.

Authors:  X Zhou; G Arthur
Journal:  J Lipid Res       Date:  1992-08       Impact factor: 5.922

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  39 in total

1.  Sugar binding induces the same global conformational change in purified LacY as in the native bacterial membrane.

Authors:  Yiling Nie; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

2.  Membrane proteins in four acts: function precedes structure determination.

Authors:  W A Cramer; S D Zakharov; S Saif Hasan; H Zhang; D Baniulis; M V Zhalnina; G M Soriano; O Sharma; J C Rochet; C Ryan; J Whitelegge; G Kurisu; E Yamashita
Journal:  Methods       Date:  2011-11-10       Impact factor: 3.608

3.  Overexpressing human membrane proteins in stably transfected and clonal human embryonic kidney 293S cells.

Authors:  Sarika Chaudhary; John E Pak; Franz Gruswitz; Vinay Sharma; Robert M Stroud
Journal:  Nat Protoc       Date:  2012-02-09       Impact factor: 13.491

4.  Toward rational design of protein detergent complexes: determinants of mixed micelles that are critical for the in vitro stabilization of a G-protein coupled receptor.

Authors:  Michelle A O'Malley; Matthew E Helgeson; Norman J Wagner; Anne S Robinson
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

5.  Energetics of ligand-induced conformational flexibility in the lactose permease of Escherichia coli.

Authors:  Yiling Nie; Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  J Biol Chem       Date:  2006-09-26       Impact factor: 5.157

6.  Crystallization and preliminary X-ray diffraction analysis of the full-length Mg2+ transporter MgtE.

Authors:  Motoyuki Hattori; Yoshiki Tanaka; Shuya Fukai; Ryuichiro Ishitani; Osamu Nureki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-07-21

Review 7.  Solution NMR of membrane proteins in bilayer mimics: small is beautiful, but sometimes bigger is better.

Authors:  Sébastien F Poget; Mark E Girvin
Journal:  Biochim Biophys Acta       Date:  2007-09-20

8.  Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.

Authors:  Devdoot S Majumdar; Irina Smirnova; Vladimir Kasho; Eyal Nir; Xiangxu Kong; Shimon Weiss; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

Review 9.  Conserved lipid-binding sites in membrane proteins: a focus on cytochrome c oxidase.

Authors:  Ling Qin; Martyn A Sharpe; R Michael Garavito; Shelagh Ferguson-Miller
Journal:  Curr Opin Struct Biol       Date:  2007-08-23       Impact factor: 6.809

10.  Co-evolving stability and conformational homogeneity of the human adenosine A2a receptor.

Authors:  Francesca Magnani; Yoko Shibata; Maria J Serrano-Vega; Christopher G Tate
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

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