Literature DB >> 16445288

Role of the C-terminal region of the B component of Methylosinus trichosporium OB3b methane monooxygenase in the regulation of oxygen activation.

Jingyan Zhang1, John D Lipscomb.   

Abstract

The effects of the C-terminal region of the B component (MMOB) of soluble methane monooxygenase (sMMO) from Methylosinus trichosporium OB3b on steady-state turnover, the transient kinetics of the reaction cycle, and the properties of the sMMO hydroxylase (MMOH) active site diiron cluster have been explored. MMOB is known to have many profound effects on the rate and specificity of sMMO. Past studies have revealed specific roles for the well-folded core structure of MMOB as well as the disordered N-terminal region. Here, it is shown that the disordered C-terminal region of MMOB also performs critical roles in the regulation of catalysis. Deletion mutants of MMOB missing 5, 8, and 13 C-terminal residues cause progressive decreases in the maximum steady-state turnover number, as well as lower apparent rate constants for formation of the key reaction cycle intermediate, compound Q. It is shown that this latter effect is actually due to a decrease in the rate constant for formation of an earlier intermediate, probably the hydroperoxo species, compound P. Moreover, the deletions result in substantial uncoupling at or before the P intermediate. It is proposed that this is due to competition between slow H(2)O(2) release from one of the intermediates and the reaction that carries this intermediate on to the next step in the cycle, which is slowed by the mutation. Electron paramagnetic resonance (EPR) studies of the hydroxylase component (MMOH) in the mixed valent state suggest that complexation with the mutant MMOBs alters the electronic properties of the diiron cluster in a manner distinct from that observed when wild-type MMOB is used. Active site structural changes are also suggested by a substantial decrease in the deuterium kinetic isotope effect for the reaction of Q with methane thought to be associated with a decrease in quantum tunneling in the C-H bond breaking reaction. Thus, the surface interactions between MMOH and MMOB that affect substrate oxidation and its regulation appear to require the complete MMOB C-terminal region for proper function.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16445288     DOI: 10.1021/bi051721j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  X-ray structure of a hydroxylase-regulatory protein complex from a hydrocarbon-oxidizing multicomponent monooxygenase, Pseudomonas sp. OX1 phenol hydroxylase.

Authors:  Matthew H Sazinsky; Pete W Dunten; Michael S McCormick; Alberto DiDonato; Stephen J Lippard
Journal:  Biochemistry       Date:  2006-12-02       Impact factor: 3.162

2.  Life in a sea of oxygen.

Authors:  John D Lipscomb
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

3.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

4.  Structure of the key species in the enzymatic oxidation of methane to methanol.

Authors:  Rahul Banerjee; Yegor Proshlyakov; John D Lipscomb; Denis A Proshlyakov
Journal:  Nature       Date:  2015-01-21       Impact factor: 49.962

5.  X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulatory Component: Correlations with Altered Reaction Cycle Dynamics.

Authors:  Jason C Jones; Rahul Banerjee; Manny M Semonis; Ke Shi; Hideki Aihara; John D Lipscomb
Journal:  Biochemistry       Date:  2021-12-15       Impact factor: 3.162

6.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

7.  Evidence for modified mechanisms of chloroethene oxidation in Pseudomonas butanovora mutants containing single amino acid substitutions in the hydroxylase alpha-subunit of butane monooxygenase.

Authors:  Kimberly H Halsey; David M Doughty; Luis A Sayavedra-Soto; Peter J Bottomley; Daniel J Arp
Journal:  J Bacteriol       Date:  2007-05-11       Impact factor: 3.490

8.  Catalytic and Spectroscopic Properties of the Halotolerant Soluble Methane Monooxygenase Reductase from Methylomonas methanica MC09.

Authors:  Elisabeth Lettau; Domenic Zill; Marta Späth; Christian Lorent; Praveen K Singh; Lars Lauterbach
Journal:  Chembiochem       Date:  2022-01-13       Impact factor: 3.461

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.