Literature DB >> 16413548

Does the proteome encode organellar pH?

Christopher L Brett1, Mark Donowitz, Rajini Rao.   

Abstract

Inherent to the proteome itself, may be information that enables proteins to buffer pH at a level that promotes their own function within a specialized compartment. We observe that the distribution of computed isoelectric points in the yeast proteome matches experimentally derived organellar pH estimates across distinct subcellular compartments. This raises an interesting evolutionary question: did the pI of proteins and the pH of organelles co-evolve to optimize function?

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Year:  2006        PMID: 16413548     DOI: 10.1016/j.febslet.2005.12.103

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  16 in total

1.  Noninvasive high-throughput single-cell analysis of the intracellular pH of Saccharomyces cerevisiae by ratiometric flow cytometry.

Authors:  Mari Valkonen; Dominik Mojzita; Merja Penttilä; Mojca Bencina
Journal:  Appl Environ Microbiol       Date:  2013-09-13       Impact factor: 4.792

2.  Vacuolar and plasma membrane proton pumps collaborate to achieve cytosolic pH homeostasis in yeast.

Authors:  Gloria A Martínez-Muñoz; Patricia Kane
Journal:  J Biol Chem       Date:  2008-05-23       Impact factor: 5.157

3.  Marginal protein stability drives subcellular proteome isoelectric point.

Authors:  Kaiser Loell; Vikas Nanda
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

4.  Homologous Alkalophilic and Acidophilic L-Arabinose isomerases reveal region-specific contributions to the pH dependence of activity and stability.

Authors:  Sang-Jae Lee; Sang Jun Lee; Yong-Jik Lee; Seong-Bo Kim; Sung-Kun Kim; Dong-Woo Lee
Journal:  Appl Environ Microbiol       Date:  2012-09-21       Impact factor: 4.792

Review 5.  The yeast lysosome-like vacuole: endpoint and crossroads.

Authors:  Sheena Claire Li; Patricia M Kane
Journal:  Biochim Biophys Acta       Date:  2008-08-13

6.  Pathobiology of Christianson syndrome: Linking disrupted endosomal-lysosomal function with intellectual disability and sensory impairments.

Authors:  Mallory Kerner-Rossi; Maria Gulinello; Steven Walkley; Kostantin Dobrenis
Journal:  Neurobiol Learn Mem       Date:  2018-05-14       Impact factor: 2.877

Review 7.  Beyond the bulk: disclosing the life of single microbial cells.

Authors:  Katrin Rosenthal; Verena Oehling; Christian Dusny; Andreas Schmid
Journal:  FEMS Microbiol Rev       Date:  2017-11-01       Impact factor: 16.408

8.  A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast.

Authors:  Sara N Mouton; David J Thaller; Matthew M Crane; Irina L Rempel; Owen T Terpstra; Anton Steen; Matt Kaeberlein; C Patrick Lusk; Arnold J Boersma; Liesbeth M Veenhoff
Journal:  Elife       Date:  2020-09-29       Impact factor: 8.140

Review 9.  Adaptations of proteins to cellular and subcellular pH.

Authors:  Bertrand Garcia-Moreno
Journal:  J Biol       Date:  2009-12-02

10.  Regulation of RNA editing by intracellular acidification.

Authors:  Turnee N Malik; Erin E Doherty; Vandana M Gaded; Theodore M Hill; Peter A Beal; Ronald B Emeson
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

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