Literature DB >> 16408915

Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: application in metabonomic toxicology studies.

Derek J Crockford1, Elaine Holmes, John C Lindon, Robert S Plumb, Severine Zirah, Stephen J Bruce, Paul Rainville, Chris L Stumpf, Jeremy K Nicholson.   

Abstract

Statistical heterospectroscopy (SHY) is a new statistical paradigm for the coanalysis of multispectroscopic data sets acquired on multiple samples. This method operates through the analysis of the intrinsic covariance between signal intensities in the same and related molecules measured by different techniques across cohorts of samples. The potential of SHY is illustrated using both 600-MHz 1H NMR and UPLC-TOFMS data obtained from control rat urine samples (n = 54) and from a corresponding hydrazine-treated group (n = 58). We show that direct cross-correlation of spectral parameters, viz. chemical shifts from NMR and m/z data from MS, is readily achievable for a variety of metabolites, which leads to improved efficiency of molecular biomarker identification. In addition to structure, higher level biological information can be obtained on metabolic pathway activity and connectivities by examination of different levels of the NMR to MS correlation and anticorrelation matrixes. The SHY approach is of general applicability to complex mixture analysis, if two or more independent spectroscopic data sets are available for any sample cohort. Biological applications of SHY as demonstrated here show promise as a new systems biology tool for biomarker recovery.

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Year:  2006        PMID: 16408915     DOI: 10.1021/ac051444m

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  63 in total

1.  Global metabolic profiling procedures for urine using UPLC-MS.

Authors:  Elizabeth J Want; Ian D Wilson; Helen Gika; Georgios Theodoridis; Robert S Plumb; John Shockcor; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2010-06       Impact factor: 13.491

2.  Evaluation of GC-APCI/MS and GC-FID as a complementary platform.

Authors:  Tiziana Pacchiarotta; Ekaterina Nevedomskaya; Alegria Carrasco-Pancorbo; André M Deelder; Oleg A Mayboroda
Journal:  J Biomol Tech       Date:  2010-12

3.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

4.  Diagnosing diabetic nephropathy by 1H NMR metabonomics of serum.

Authors:  Ville-Petteri Mäkinen; Pasi Soininen; Carol Forsblom; Maija Parkkonen; Petri Ingman; Kimmo Kaski; Per-Henrik Groop; Mika Ala-Korpela
Journal:  MAGMA       Date:  2006-12-15       Impact factor: 2.310

Review 5.  Metabonomics techniques and applications to pharmaceutical research & development.

Authors:  John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Pharm Res       Date:  2006-05-25       Impact factor: 4.200

Review 6.  Metabolomics and malaria biology.

Authors:  Viswanathan Lakshmanan; Kyu Y Rhee; Johanna P Daily
Journal:  Mol Biochem Parasitol       Date:  2010-10-21       Impact factor: 1.759

Review 7.  Biomarkers for neuroAIDS: the widening scope of metabolomics.

Authors:  Gurudutt Pendyala; Elizabeth J Want; William Webb; Gary Siuzdak; Howard S Fox
Journal:  J Neuroimmune Pharmacol       Date:  2006-10-10       Impact factor: 4.147

Review 8.  Biochemical individuality reflected in chromatographic, electrophoretic and mass-spectrometric profiles.

Authors:  Milos V Novotny; Helena A Soini; Yehia Mechref
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2008-04-15       Impact factor: 3.205

9.  1H NMR metabolomics study of age profiling in children.

Authors:  Haiwei Gu; Zhengzheng Pan; Bowei Xi; Bryan E Hainline; Narasimhamurthy Shanaiah; Vincent Asiago; G A Nagana Gowda; Daniel Raftery
Journal:  NMR Biomed       Date:  2009-10       Impact factor: 4.044

Review 10.  Opening up the "Black Box": metabolic phenotyping and metabolome-wide association studies in epidemiology.

Authors:  Magda Bictash; Timothy M Ebbels; Queenie Chan; Ruey Leng Loo; Ivan K S Yap; Ian J Brown; Maria de Iorio; Martha L Daviglus; Elaine Holmes; Jeremiah Stamler; Jeremy K Nicholson; Paul Elliott
Journal:  J Clin Epidemiol       Date:  2010-01-08       Impact factor: 6.437

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