Literature DB >> 16408016

Assignment of protein function in the postgenomic era.

Alan Saghatelian1, Benjamin F Cravatt.   

Abstract

Genome sequencing projects have provided researchers with an unprecedented boon of molecular information that promises to revolutionize our understanding of life and lead to new treatments of its disorders. However, genome sequences alone offer only limited insights into the biochemical pathways that determine cell and tissue function. These complex metabolic and signaling networks are largely mediated by proteins. The vast number of uncharacterized proteins found in prokaryotic and eukaryotic systems suggests that our knowledge of cellular biochemistry is far from complete. Here, we highlight a new breed of 'postgenomic' methods that aim to assign functions to proteins through the integrated application of chemical and biological techniques.

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Year:  2005        PMID: 16408016     DOI: 10.1038/nchembio0805-130

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  37 in total

Review 1.  Characterizing proteins of unknown function: orphan cytochrome p450 enzymes as a paradigm.

Authors:  F Peter Guengerich; Zhongmei Tang; S Giovanna Salamanca-Pinzón; Qian Cheng
Journal:  Mol Interv       Date:  2010-06

2.  Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer.

Authors:  Wenyun Lu; Michelle F Clasquin; Eugene Melamud; Daniel Amador-Noguez; Amy A Caudy; Joshua D Rabinowitz
Journal:  Anal Chem       Date:  2010-04-15       Impact factor: 6.986

3.  Identification of hydrophobic tags for the degradation of stabilized proteins.

Authors:  Hyun Seop Tae; Thomas B Sundberg; Taavi K Neklesa; Devin J Noblin; Jeffrey L Gustafson; Anke G Roth; Kanak Raina; Craig M Crews
Journal:  Chembiochem       Date:  2012-01-23       Impact factor: 3.164

4.  Proteomic profiling of metalloprotease activities with cocktails of active-site probes.

Authors:  Stephan A Sieber; Sherry Niessen; Heather S Hoover; Benjamin F Cravatt
Journal:  Nat Chem Biol       Date:  2006-03-26       Impact factor: 15.040

Review 5.  FINDSITE: a combined evolution/structure-based approach to protein function prediction.

Authors:  Jeffrey Skolnick; Michal Brylinski
Journal:  Brief Bioinform       Date:  2009-03-26       Impact factor: 11.622

Review 6.  A primer on ankyrin repeat function in TRP channels and beyond.

Authors:  Rachelle Gaudet
Journal:  Mol Biosyst       Date:  2008-03-26

7.  Activity-based protein profiling of organophosphorus and thiocarbamate pesticides reveals multiple serine hydrolase targets in mouse brain.

Authors:  Daniel K Nomura; John E Casida
Journal:  J Agric Food Chem       Date:  2010-07-21       Impact factor: 5.279

8.  Crius: A novel fragment-based algorithm of de novo substrate prediction for enzymes.

Authors:  Zhiqiang Yao; Shuiqin Jiang; Lujia Zhang; Bei Gao; Xiao He; John Z H Zhang; Dongzhi Wei
Journal:  Protein Sci       Date:  2018-07-18       Impact factor: 6.725

Review 9.  The Bump-and-Hole Tactic: Expanding the Scope of Chemical Genetics.

Authors:  Kabirul Islam
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

10.  Lipid Osteoclastokines Regulate Breast Cancer Bone Metastasis.

Authors:  Jing Y Krzeszinski; Adam G Schwaid; Wing Yin Cheng; Zixue Jin; Zachary R Gallegos; Alan Saghatelian; Yihong Wan
Journal:  Endocrinology       Date:  2017-03-01       Impact factor: 4.736

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