Literature DB >> 1638257

Ising model for B-Z transition in supercoiled DNA.

S Ghosh1.   

Abstract

The possible existence of nucleic acids in right-handed and left-handed helical forms is considered. A statistical mechanical model is developed to obtain an expression for a change in twist during helical transformation in terms of corresponding free energies and linking for a supercoiled DNA. The theoretically predicted values are compared with those determined experimentally. The physico-chemical significance of the parameters is discussed.

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Year:  1992        PMID: 1638257     DOI: 10.1007/bf02459927

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  21 in total

1.  A simple model of DNA superhelices in solution.

Authors:  R D Camerini-Otero; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

Review 2.  The chemistry and biology of left-handed Z-DNA.

Authors:  A Rich; A Nordheim; A H Wang
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

3.  DNA supercoiling and its effects on DNA structure and function.

Authors:  J C Wang; L J Peck; K Becherer
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

4.  Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions.

Authors:  C K Singleton; J Klysik; S M Stirdivant; R D Wells
Journal:  Nature       Date:  1982-09-23       Impact factor: 49.962

5.  The anatomy of A-, B-, and Z-DNA.

Authors:  R E Dickerson; H R Drew; B N Conner; R M Wing; A V Fratini; M L Kopka
Journal:  Science       Date:  1982-04-30       Impact factor: 47.728

6.  Theoretical analysis of transitions between B- and Z-conformations in torsionally stressed DNA.

Authors:  C J Benham
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

7.  Energetics of B-to-Z transition in DNA.

Authors:  L J Peck; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

8.  Cooperative transitions in DNA with no separation of strands.

Authors:  V I Ivanov; L E Minchenkova; E E Minyat; A K Schyolkina
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

9.  The sequence (dC-dA)n X (dG-dT)n forms left-handed Z-DNA in negatively supercoiled plasmids.

Authors:  A Nordheim; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

10.  Facile transition of poly[d(TG) x d(CA)] into a left-handed helix in physiological conditions.

Authors:  D B Haniford; D E Pulleyblank
Journal:  Nature       Date:  1983-04-14       Impact factor: 49.962

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