Literature DB >> 205866

A simple model of DNA superhelices in solution.

R D Camerini-Otero, G Felsenfeld.   

Abstract

Closed circular DNA molecules in aqueous solution take the form of interwound superhelices over a wide range of superhelix densities. We describe a very simple model of such a superhelix in which twisting and bending forces are in balance, subject both to topological constraints and to a limitation on the distance of closet approach of the interwound duplexes of the superhelix. The model is consistent with some of the observed physical properties of closed circular DNA, and suggests that there may be severe limits to the range of allowable geometries for the superhelix structure of minimum energy.

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Year:  1978        PMID: 205866      PMCID: PMC392408          DOI: 10.1073/pnas.75.4.1708

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  X-ray diffraction studies of circular superhelical DNA at 300-10,000-A resolution.

Authors:  G W Brady; D B Fein
Journal:  Nature       Date:  1976-11-18       Impact factor: 49.962

2.  Specific folding and contraction of DNA by histones H3 and H4.

Authors:  M Bina-Stein; R T Simpson
Journal:  Cell       Date:  1977-07       Impact factor: 41.582

3.  The number of superhelical turns in native virion SV40 DNA and minicol DNA determined by the band counting method.

Authors:  M Shure; J Vinograd
Journal:  Cell       Date:  1976-06       Impact factor: 41.582

4.  Circular superhelical DNA.

Authors:  J A Subirana; L C Puigjaner
Journal:  Nature       Date:  1977-06-23       Impact factor: 49.962

5.  Elastic model of supercoiling.

Authors:  C J Benham
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

6.  Supercoiling energy and nucleosome formation: the role of the arginine-rich histone kernel.

Authors:  R D Camerini-Otero; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

7.  Sedimentation velocity behavior of closed circular SV40 DNA as a function of superhelix density, ionic strength, counterion and temperature.

Authors:  W B Upholt; H B Gray; J Vinograd
Journal:  J Mol Biol       Date:  1971-11-28       Impact factor: 5.469

8.  Interaction of closed circular DNA with intercalative dyes. II. The free energy of superhelix formation in SV40 DNA.

Authors:  W Bauer; J Vinograd
Journal:  J Mol Biol       Date:  1970-02-14       Impact factor: 5.469

9.  Sedimentation coefficient of polyoma virus DNA.

Authors:  H B Gray
Journal:  Biopolymers       Date:  1967       Impact factor: 2.505

10.  Physical and topological properties of circular DNA.

Authors:  J Vinograd; J Lebowitz
Journal:  J Gen Physiol       Date:  1966-07       Impact factor: 4.086

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  8 in total

1.  Electrostatic-undulatory theory of plectonemically supercoiled DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

2.  The effect of the superhelicity on the double helix twist angle in DNA.

Authors:  B N Belintsev; A V Gagua; S A Nedospasov
Journal:  Nucleic Acids Res       Date:  1979-03       Impact factor: 16.971

3.  Ising model for B-Z transition in supercoiled DNA.

Authors:  S Ghosh
Journal:  Bull Math Biol       Date:  1992-09       Impact factor: 1.758

4.  1H nuclear magnetic resonance investigation of flexibility in DNA.

Authors:  T A Early; D R Kearns
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

5.  Thermodynamics of B-Z transition in supercoiled DNA.

Authors:  S Sen; R Majumdar
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

6.  Anisotropic flexibility of DNA and the nucleosomal structure.

Authors:  V B Zhurkin; Y P Lysov; V I Ivanov
Journal:  Nucleic Acids Res       Date:  1979-03       Impact factor: 16.971

7.  The inverted repeat as a recognizable structural feature in supercoiled DNA molecules.

Authors:  D M Lilley
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

8.  The free energy of DNA supercoiling is enthalpy-determined.

Authors:  A Seidl; H J Hinz
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

  8 in total

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