Literature DB >> 16365876

Chromatin remodeling in DNA replication.

Karina B Falbo1, Xuetong Shen.   

Abstract

Chromatin remodeling complexes have evolved to solve a very basic problem for eukaryotic cells accommodation of the genome to fit the dimensions of the nucleus without loss of access to the DNA molecule. In the nucleus, DNA is wrapped around histones to form nucleosomes and other higher order compact chromatin structures. Chromatin remodeling complexes enable highly regulated access to DNA sequences in the context of chromatin, and it is well known that these complexes are involved in regulation of transcription. However, gene expression is not the only process that occurs in the nucleus. DNA has to be replicated, recombined, and repaired. In this regard, it is notable that the recent discoveries have linked ATP-dependent remodeling complexes to DNA damage repair. These results have raised challenging questions about the possible versatility of chromatin remodeling complexes in other nuclear activities, particularly in DNA replication, since a number of recent studies have suggested a connection between this essential cellular process and chromatin remodeling. However, the chromatin remodeling events regulating DNA replication have not been extensively investigated. The aim of this prospect is to summarize recent studies that implicate chromatin remodeling in DNA replication and to address potential roles of chromatin remodeling at various stages of eukaryotic DNA replication. 2005 Wiley-Liss, Inc.

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Year:  2006        PMID: 16365876     DOI: 10.1002/jcb.20752

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  18 in total

Review 1.  Histones, histone chaperones and nucleosome assembly.

Authors:  Rebecca J Burgess; Zhiguo Zhang
Journal:  Protein Cell       Date:  2010-07       Impact factor: 14.870

2.  Genome-wide analysis of chromatin status using tiling microarrays.

Authors:  Sushma Shivaswamy; Vishwanath R Iyer
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

3.  ATP-dependent chromatin remodeling shapes the DNA replication landscape.

Authors:  Jack A Vincent; Tracey J Kwong; Toshio Tsukiyama
Journal:  Nat Struct Mol Biol       Date:  2008-04-13       Impact factor: 15.369

Review 4.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

5.  The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Authors:  Nathan Gamarra; Stephanie L Johnson; Michael J Trnka; Alma L Burlingame; Geeta J Narlikar
Journal:  Elife       Date:  2018-04-17       Impact factor: 8.140

6.  Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly.

Authors:  Qing Li; Hui Zhou; Hugo Wurtele; Brian Davies; Bruce Horazdovsky; Alain Verreault; Zhiguo Zhang
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

7.  Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

Authors:  Tae-Jin Lee; Pete E Pascuzzi; Sharon B Settlage; Randall W Shultz; Milos Tanurdzic; Pablo D Rabinowicz; Margit Menges; Ping Zheng; Dorrie Main; James A H Murray; Bryon Sosinski; George C Allen; Robert A Martienssen; Linda Hanley-Bowdoin; Matthew W Vaughn; William F Thompson
Journal:  PLoS Genet       Date:  2010-06-10       Impact factor: 5.917

8.  Yra1 is required for S phase entry and affects Dia2 binding to replication origins.

Authors:  Swarna Swaminathan; Andrew C Kile; Elizabeth M MacDonald; Deanna M Koepp
Journal:  Mol Cell Biol       Date:  2007-04-23       Impact factor: 4.272

9.  Involvement of a chromatin remodeling complex in damage tolerance during DNA replication.

Authors:  Karina B Falbo; Constance Alabert; Yuki Katou; Su Wu; Junhong Han; Tammy Wehr; Jing Xiao; Xiangwei He; Zhiguo Zhang; Yang Shi; Katsu Shirahige; Philippe Pasero; Xuetong Shen
Journal:  Nat Struct Mol Biol       Date:  2009-10-25       Impact factor: 15.369

10.  Cac1 WHD and PIP domains have distinct roles in replisome progression and genomic stability.

Authors:  Ioannis Tsirkas; Daniel Dovrat; Yang Lei; Angeliki Kalyva; Diana Lotysh; Qing Li; Amir Aharoni
Journal:  Curr Genet       Date:  2020-10-06       Impact factor: 3.886

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