Literature DB >> 16364749

Translational control in positive strand RNA plant viruses.

Theo W Dreher1, W Allen Miller.   

Abstract

The great variety of genome organizations means that most plant positive strand viral RNAs differ from the standard 5'-cap/3'-poly(A) structure of eukaryotic mRNAs. The cap and poly(A) tail recruit initiation factors that support the formation of a closed loop mRNA conformation, the state in which translation initiation is most efficient. We review the diverse array of cis-acting sequences present in viral mRNAs that compensate for the absence of a cap, poly(A) tail, or both. We also discuss the cis-acting sequences that control translation strategies that both amplify the coding potential of a genome and regulate the accumulations of viral gene products. Such strategies include leaky scanning initiation of translation of overlapping open reading frames, stop codon readthrough, and ribosomal frameshifting. Finally, future directions for research on the translation of plant positive strand viruses are discussed.

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Year:  2006        PMID: 16364749      PMCID: PMC1847782          DOI: 10.1016/j.virol.2005.09.031

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  125 in total

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Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  tRNA-like structures. Structure, function and evolutionary significance.

Authors:  R M Mans; C W Pleij; L Bosch
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Authors:  D R Wells; R L Tanguay; H Le; D R Gallie
Journal:  Genes Dev       Date:  1998-10-15       Impact factor: 11.361

4.  High resolution analysis of the readthrough domain of beet necrotic yellow vein virus readthrough protein: a KTER motif is important for efficient transmission of the virus by Polymyxa betae.

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Journal:  J Gen Virol       Date:  1996-07       Impact factor: 3.891

5.  A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids.

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Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

6.  Inhibition of host gene expression associated with plant virus replication.

Authors:  D Wang; A J Maule
Journal:  Science       Date:  1995-01-13       Impact factor: 47.728

7.  Translation enhancing properties of the 5'-leader of potato virus X genomic RNA.

Authors:  D A Zelenina; O I Kulaeva; E V Smirnyagina; A G Solovyev; N A Miroshnichenko; O N Fedorkin; N P Rodionova; J G Atabekov
Journal:  FEBS Lett       Date:  1992-01-27       Impact factor: 4.124

8.  Efficient ribosome binding of brome mosaic virus (BMV) RNA4 contributes to its ability to outcompete the other BMV RNAs for translation.

Authors:  J W Pyne; T C Hall
Journal:  Intervirology       Date:  1979       Impact factor: 1.763

9.  The 105-kDa polyprotein of southern bean mosaic virus is translated by scanning ribosomes.

Authors:  K Sivakumaran; D L Hacker
Journal:  Virology       Date:  1998-06-20       Impact factor: 3.616

10.  Aphid transmission of beet western yellows luteovirus requires the minor capsid read-through protein P74.

Authors:  V Brault; J F van den Heuvel; M Verbeek; V Ziegler-Graff; A Reutenauer; E Herrbach; J C Garaud; H Guilley; K Richards; G Jonard
Journal:  EMBO J       Date:  1995-02-15       Impact factor: 11.598

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  84 in total

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Authors:  Beth L Nicholson; Baodong Wu; Irina Chevtchenko; K Andrew White
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Review 3.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

4.  Genomic detection and characterization of a Korean isolate of Little cherry virus 1 sampled from a peach tree.

Authors:  Seungmo Lim; Davaajargal Igori; Ran Hee Yoo; Fumei Zhao; In-Sook Cho; Gug-Seoun Choi; Hyoun-Sub Lim; Su-Heon Lee; Jae Sun Moon
Journal:  Virus Genes       Date:  2015-08-28       Impact factor: 2.332

5.  Analysis of a 3'-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA termini.

Authors:  Marc R Fabian; K Andrew White
Journal:  RNA       Date:  2006-05-08       Impact factor: 4.942

Review 6.  Long-distance RNA-RNA interactions in plant virus gene expression and replication.

Authors:  W Allen Miller; K Andrew White
Journal:  Annu Rev Phytopathol       Date:  2006       Impact factor: 13.078

7.  Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element.

Authors:  Aurélie M Rakotondrafara; Charlotta Polacek; Eva Harris; W Allen Miller
Journal:  RNA       Date:  2006-08-18       Impact factor: 4.942

8.  Translational Regulation of Cytoplasmic mRNAs.

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9.  Assembly of two independent populations of flock house virus particles with distinct RNA packaging characteristics in the same cell.

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Journal:  J Virol       Date:  2006-11-01       Impact factor: 5.103

10.  Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome.

Authors:  Hong Na; Marc R Fabian; K Andrew White
Journal:  RNA       Date:  2006-10-31       Impact factor: 4.942

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