Literature DB >> 16364346

Rapid protein digestion and identification using monolithic enzymatic microreactor coupled with nano-liquid chromatography-electrospray ionization mass spectrometry.

Jicheng Duan1, Liangliang Sun, Zhen Liang, Jie Zhang, Hui Wang, Lihua Zhang, Weibing Zhang, Yukui Zhang.   

Abstract

A novel monolithic enzymatic microreactor was prepared in the fused-silica capillary by in situ polymerization of acrylamide (AA), N-acryloxysuccinimide (NAS) and ethylene dimethacrylate (EDMA) in the presence of a binary porogenic mixture of dodecanol and cyclohexanol, which could offer very low back pressure, enabling the fast digestion of proteins. The performance of the monolithic microreactor was demonstrated by digesting cytochrome c at high flow rate, and the comparisons between the in-solution digestion and on-column reaction were made by a nano-high performance liquid chromatography-mass spectrometry (nano-HPLC-MS) system. The performance of the monolithic microreactor was demonstrated with the digestion of cytochrome c at the fast flow rate of 1 microL/min, which afforded a residence time of 7s, yielding a sequence coverage of 54.81% using strict multiple database searching thresholds. Future more, a mixture of four standard proteins was digested and analyzed using the on-line digestion and nano-HPLC-MS system. The results showed the promising of such a system in the analysis of protein mixture.

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Year:  2005        PMID: 16364346     DOI: 10.1016/j.chroma.2005.11.102

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  11 in total

1.  Development of an automated digestion and droplet deposition microfluidic chip for MALDI-TOF MS.

Authors:  Jeonghoon Lee; Harrison K Musyimi; Steven A Soper; Kermit K Murray
Journal:  J Am Soc Mass Spectrom       Date:  2008-04-08       Impact factor: 3.109

2.  Coupling methanol denaturation, immobilized trypsin digestion, and accurate mass and time tagging for liquid-chromatography-based shotgun proteomics of low nanogram amounts of RAW 264.7 cell lysate.

Authors:  Liangliang Sun; Guijie Zhu; Yihan Li; Ping Yang; Norman J Dovichi
Journal:  Anal Chem       Date:  2012-10-05       Impact factor: 6.986

3.  Uncovering immobilized trypsin digestion features from large-scale proteome data generated by high-resolution mass spectrometry.

Authors:  Liangliang Sun; Guijie Zhu; Xiaojing Yan; Si Mou; Norman J Dovichi
Journal:  J Chromatogr A       Date:  2014-02-22       Impact factor: 4.759

4.  Characterization of an immobilized enzyme reactor for on-line protein digestion.

Authors:  Stephanie Moore; Stephanie Hess; James Jorgenson
Journal:  J Chromatogr A       Date:  2016-11-15       Impact factor: 4.759

5.  Systematic Evaluation of Immobilized Trypsin-Based Fast Protein Digestion for Deep and High-Throughput Bottom-Up Proteomics.

Authors:  Xiaojing Shen; Liangliang Sun
Journal:  Proteomics       Date:  2018-04-15       Impact factor: 3.984

6.  Increased protein structural resolution from diethylpyrocarbonate-based covalent labeling and mass spectrometric detection.

Authors:  Yuping Zhou; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2012-04       Impact factor: 3.109

7.  High efficiency and quantitatively reproducible protein digestion by trypsin-immobilized magnetic microspheres.

Authors:  Liangliang Sun; Yihan Li; Ping Yang; Guijie Zhu; Norman J Dovichi
Journal:  J Chromatogr A       Date:  2011-12-02       Impact factor: 4.759

Review 8.  Nanobiocatalysis for protein digestion in proteomic analysis.

Authors:  Jungbae Kim; Byoung Chan Kim; Daniel Lopez-Ferrer; Konstantinos Petritis; Richard D Smith
Journal:  Proteomics       Date:  2010-02       Impact factor: 3.984

9.  Integrated capillary zone electrophoresis-electrospray ionization tandem mass spectrometry system with an immobilized trypsin microreactor for online digestion and analysis of picogram amounts of RAW 264.7 cell lysate.

Authors:  Liangliang Sun; Guijie Zhu; Norman J Dovichi
Journal:  Anal Chem       Date:  2013-04-04       Impact factor: 6.986

Review 10.  Less common applications of monoliths: IV. Recent developments in immobilized enzyme reactors for proteomics and biotechnology.

Authors:  Jana Krenkova; Frantisek Svec
Journal:  J Sep Sci       Date:  2009-03       Impact factor: 3.645

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