Literature DB >> 16364320

Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery.

Shintaro Kitaoka1, Kei Wada, Yuko Hasegawa, Yoshiko Minami, Keiichi Fukuyama, Yasuhiro Takahashi.   

Abstract

SufC is an ATPase component of the SUF machinery, which is involved in the biosynthesis of Fe-S clusters. To gain insight into the function of this protein, we have determined the crystal structure of Escherichia coli SufC at 2.5A resolution. Despite the similarity of the overall structure with ABC-ATPases (nucleotide-binding domains of ABC transporters), some key differences were observed. Glu171, an invariant residue involved in ATP hydrolysis, is rotated away from the nucleotide-binding pocket to form a SufC-specific salt bridge with Lys152. Due to this salt bridge, D-loop that follows Glu171 is flipped out to the molecular surface, which may sterically inhibit the formation of an active dimer. Thus, the salt bridge may play a critical role in regulating ATPase activity and preventing wasteful ATP hydrolysis. Furthermore, SufC has a unique Q-loop structure on its surface, which may form a binding site for its partner proteins, SufB and/or SufD.

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Year:  2005        PMID: 16364320     DOI: 10.1016/j.febslet.2005.11.058

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  15 in total

1.  Flexibility in the ABC transporter MsbA: Alternating access with a twist.

Authors:  Andrew Ward; Christopher L Reyes; Jodie Yu; Christopher B Roth; Geoffrey Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-16       Impact factor: 11.205

2.  Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis.

Authors:  Kei Hirabayashi; Eiki Yuda; Naoyuki Tanaka; Sumie Katayama; Kenji Iwasaki; Takashi Matsumoto; Genji Kurisu; F Wayne Outten; Keiichi Fukuyama; Yasuhiro Takahashi; Kei Wada
Journal:  J Biol Chem       Date:  2015-10-15       Impact factor: 5.157

Review 3.  Fe-S cluster biogenesis by the bacterial Suf pathway.

Authors:  Matthew Blahut; Enis Sanchez; Claire E Fisher; F Wayne Outten
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-18       Impact factor: 4.739

4.  Iron-sulfur (Fe-S) cluster assembly: the SufBCD complex is a new type of Fe-S scaffold with a flavin redox cofactor.

Authors:  Silke Wollers; Gunhild Layer; Ricardo Garcia-Serres; Luca Signor; Martin Clemancey; Jean-Marc Latour; Marc Fontecave; Sandrine Ollagnier de Choudens
Journal:  J Biol Chem       Date:  2010-05-11       Impact factor: 5.157

5.  Mutations at arginine 352 alter the pore architecture of CFTR.

Authors:  Guiying Cui; Zhi-Ren Zhang; Andrew R W O'Brien; Binlin Song; Nael A McCarty
Journal:  J Membr Biol       Date:  2008-04-18       Impact factor: 1.843

6.  Hydrodynamic characterization of the SufBC and SufCD complexes and their interaction with fluorescent adenosine nucleotides.

Authors:  Arsen Petrovic; Colin T Davis; Kaveri Rangachari; Barbara Clough; R J M Iain Wilson; John F Eccleston
Journal:  Protein Sci       Date:  2008-04-15       Impact factor: 6.725

7.  Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of the SufC(2)-SufD(2) complex.

Authors:  Kei Wada; Norika Sumi; Rina Nagai; Kenji Iwasaki; Takayuki Sato; Kei Suzuki; Yuko Hasegawa; Shintaro Kitaoka; Yoshiko Minami; F Wayne Outten; Yasuhiro Takahashi; Keiichi Fukuyama
Journal:  J Mol Biol       Date:  2009-01-31       Impact factor: 5.469

Review 8.  Fe-S cluster assembly pathways in bacteria.

Authors:  Carla Ayala-Castro; Avneesh Saini; F Wayne Outten
Journal:  Microbiol Mol Biol Rev       Date:  2008-03       Impact factor: 11.056

Review 9.  Iron-sulfur cluster biosynthesis.

Authors:  Sibali Bandyopadhyay; Kala Chandramouli; Michael K Johnson
Journal:  Biochem Soc Trans       Date:  2008-12       Impact factor: 5.407

10.  Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.

Authors:  Mohan Babu; Roland Arnold; Cedoljub Bundalovic-Torma; Alla Gagarinova; Keith S Wong; Ashwani Kumar; Geordie Stewart; Bahram Samanfar; Hiroyuki Aoki; Omar Wagih; James Vlasblom; Sadhna Phanse; Krunal Lad; Angela Yeou Hsiung Yu; Christopher Graham; Ke Jin; Eric Brown; Ashkan Golshani; Philip Kim; Gabriel Moreno-Hagelsieb; Jack Greenblatt; Walid A Houry; John Parkinson; Andrew Emili
Journal:  PLoS Genet       Date:  2014-02-20       Impact factor: 5.917

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