Literature DB >> 16360925

Cap-independent translation of plant viral RNAs.

Elizabeth L Pettit Kneller1, Aurélie M Rakotondrafara, W Allen Miller.   

Abstract

The RNAs of many plant viruses lack a 5' cap and must be translated by a cap-independent mechanism. Here, we discuss the remarkably diverse cap-independent translation elements that have been identified in members of the Potyviridae, Luteoviridae, and Tombusviridae families, and genus Tobamovirus. Many other plant viruses have uncapped RNAs but their translation control elements are uncharacterized. Cap-independent translation elements of plant viruses differ strikingly from those of animal viruses: they are smaller (<200 nt), some are located in the 3' untranslated region, some require ribosome scanning from the 5' end of the mRNA, and the 5' UTR elements are much less structured than those of animal viruses. We discuss how these elements may interact with host translation factors, and speculate on their mechanism of action and their roles in the virus replication cycle. Much remains to be learned about how these elements enable plant viruses to usurp the host translational machinery.

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Substances:

Year:  2005        PMID: 16360925      PMCID: PMC1880899          DOI: 10.1016/j.virusres.2005.10.010

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  91 in total

1.  Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA.

Authors:  L Guo; E M Allen; W A Miller
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

2.  Identification of the motifs within the tobacco mosaic virus 5'-leader responsible for enhancing translation.

Authors:  D R Gallie; V Walbot
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

3.  The potyvirus recessive resistance gene, sbm1, identifies a novel role for translation initiation factor eIF4E in cell-to-cell trafficking.

Authors:  Zhihuan Gao; Elisabeth Johansen; Samantha Eyers; Carole L Thomas; T H Noel Ellis; Andrew J Maule
Journal:  Plant J       Date:  2004-11       Impact factor: 6.417

4.  An RNA domain within the 5' untranslated region of the tomato bushy stunt virus genome modulates viral RNA replication.

Authors:  B Wu; W B Vanti; K A White
Journal:  J Mol Biol       Date:  2001-01-26       Impact factor: 5.469

5.  Interaction between zucchini yellow mosaic potyvirus RNA-dependent RNA polymerase and host poly-(A) binding protein.

Authors:  X Wang; Z Ullah; R Grumet
Journal:  Virology       Date:  2000-09-30       Impact factor: 3.616

6.  Barley yellow dwarf virus: Luteoviridae or Tombusviridae?

Authors:  W Allen Miller; Sijun Liu; Randy Beckett
Journal:  Mol Plant Pathol       Date:  2002-07-01       Impact factor: 5.663

7.  The 5' and 3' extremities of the satellite tobacco necrosis virus translational enhancer domain contribute differentially to stimulation of translation.

Authors:  Rosalinde van Lipzig; Alexander P Gultyaev; Cornelis W A Pleij; Marc van Montagu; Marc Cornelissen; Frank Meulewaeter
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

8.  Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase.

Authors:  R Quadt; C C Kao; K S Browning; R P Hershberger; P Ahlquist
Journal:  Proc Natl Acad Sci U S A       Date:  1993-02-15       Impact factor: 11.205

9.  A natural recessive resistance gene against potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E).

Authors:  Sandrine Ruffel; Marie-Hélène Dussault; Alain Palloix; Benoît Moury; Abdelhafid Bendahmane; Christophe Robaglia; Carole Caranta
Journal:  Plant J       Date:  2002-12       Impact factor: 6.417

Review 10.  The mRNA cap-binding protein eIF4E in post-transcriptional gene expression.

Authors:  Tobias von der Haar; John D Gross; Gerhard Wagner; John E G McCarthy
Journal:  Nat Struct Mol Biol       Date:  2004-06       Impact factor: 15.369

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  62 in total

1.  Expected distance between terminal nucleotides of RNA secondary structures.

Authors:  Peter Clote; Yann Ponty; Jean-Marc Steyaert
Journal:  J Math Biol       Date:  2011-10-09       Impact factor: 2.259

2.  Tombusvirus recruitment of host translational machinery via the 3' UTR.

Authors:  Beth L Nicholson; Baodong Wu; Irina Chevtchenko; K Andrew White
Journal:  RNA       Date:  2010-05-27       Impact factor: 4.942

3.  Inhibition of pokeweed antiviral protein (PAP) by turnip mosaic virus genome-linked protein (VPg).

Authors:  Artem V Domashevskiy; Hiroshi Miyoshi; Dixie J Goss
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

4.  Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3' untranslated region.

Authors:  Hiro-Oki Iwakawa; Yuri Tajima; Takako Taniguchi; Masanori Kaido; Kazuyuki Mise; Yukihide Tomari; Hisaaki Taniguchi; Tetsuro Okuno
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

Review 5.  Long-distance RNA-RNA interactions in plant virus gene expression and replication.

Authors:  W Allen Miller; K Andrew White
Journal:  Annu Rev Phytopathol       Date:  2006       Impact factor: 13.078

6.  Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element.

Authors:  Aurélie M Rakotondrafara; Charlotta Polacek; Eva Harris; W Allen Miller
Journal:  RNA       Date:  2006-08-18       Impact factor: 4.942

7.  Structures required for poly(A) tail-independent translation overlap with, but are distinct from, cap-independent translation and RNA replication signals at the 3' end of Tobacco necrosis virus RNA.

Authors:  Ruizhong Shen; W Allen Miller
Journal:  Virology       Date:  2006-10-04       Impact factor: 3.616

Review 8.  The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs.

Authors:  W A Miller; Z Wang; K Treder
Journal:  Biochem Soc Trans       Date:  2007-12       Impact factor: 5.407

9.  Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome.

Authors:  Hong Na; Marc R Fabian; K Andrew White
Journal:  RNA       Date:  2006-10-31       Impact factor: 4.942

10.  RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1.

Authors:  Wei Xu; K Andrew White
Journal:  J Virol       Date:  2009-07-15       Impact factor: 5.103

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