Literature DB >> 16354667

Rational design of intercellular adhesion molecule-1 (ICAM-1) variants for antagonizing integrin lymphocyte function-associated antigen-1-dependent adhesion.

Gang Song1, Greg A Lazar, Tanja Kortemme, Motomu Shimaoka, John R Desjarlais, David Baker, Timothy A Springer.   

Abstract

The interaction between integrin lymphocyte function-associated antigen-1 (LFA-1) and its ligand intercellular adhesion molecule-1 (ICAM-1) is critical in immunological and inflammatory reactions but, like other adhesive interactions, is of low affinity. Here, multiple rational design methods were used to engineer ICAM-1 mutants with enhanced affinity for LFA-1. Five amino acid substitutions 1) enhance the hydrophobicity and packing of residues surrounding Glu-34 of ICAM-1, which coordinates to a Mg2+ in the LFA-1 I domain, and 2) alter associations at the edges of the binding interface. The affinity of the most improved ICAM-1 mutant for intermediate- and high-affinity LFA-1 I domains was increased by 19-fold and 22-fold, respectively, relative to wild type. Moreover, potency was similarly enhanced for inhibition of LFA-1-dependent ligand binding and cell adhesion. Thus, rational design can be used to engineer novel adhesion molecules with high monomeric affinity; furthermore, the ICAM-1 mutant holds promise for targeting LFA-1-ICAM-1 interaction for biological studies and therapeutic purposes.

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Year:  2005        PMID: 16354667      PMCID: PMC1455478          DOI: 10.1074/jbc.M510454200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction.

Authors:  T Selzer; G Schreiber
Journal:  J Mol Biol       Date:  1999-03-26       Impact factor: 5.469

2.  Prediction of amino acid sequence from structure.

Authors:  K Raha; A M Wollacott; M J Italia; J R Desjarlais
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

Review 3.  Protein recognition by cell surface receptors: physiological receptors versus virus interactions.

Authors:  Jia huai Wang
Journal:  Trends Biochem Sci       Date:  2002-03       Impact factor: 13.807

4.  Native protein sequences are close to optimal for their structures.

Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

Review 5.  Computational design of protein-protein interactions.

Authors:  Tanja Kortemme; David Baker
Journal:  Curr Opin Chem Biol       Date:  2004-02       Impact factor: 8.822

6.  The alpha subunit cytoplasmic domain regulates the assembly and adhesiveness of integrin lymphocyte function-associated antigen-1.

Authors:  C F Lu; T A Springer
Journal:  J Immunol       Date:  1997-07-01       Impact factor: 5.422

7.  De novo protein design: fully automated sequence selection.

Authors:  B I Dahiyat; S L Mayo
Journal:  Science       Date:  1997-10-03       Impact factor: 47.728

8.  Dimerization and the effectiveness of ICAM-1 in mediating LFA-1-dependent adhesion.

Authors:  C D Jun; M Shimaoka; C V Carman; J Takagi; T A Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

9.  Expression and polarization of intercellular adhesion molecule-1 on human intestinal epithelia: consequences for CD11b/CD18-mediated interactions with neutrophils.

Authors:  C A Parkos; S P Colgan; M S Diamond; A Nusrat; T W Liang; T A Springer; J L Madara
Journal:  Mol Med       Date:  1996-07       Impact factor: 6.354

10.  The arrangement of the immunoglobulin-like domains of ICAM-1 and the binding sites for LFA-1 and rhinovirus.

Authors:  D E Staunton; M L Dustin; H P Erickson; T A Springer
Journal:  Cell       Date:  1990-04-20       Impact factor: 41.582

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  22 in total

1.  The C-terminal αI domain linker as a critical structural element in the conformational activation of αI integrins.

Authors:  Gabriele Weitz-Schmidt; Thomas Schürpf; Timothy A Springer
Journal:  J Biol Chem       Date:  2011-09-30       Impact factor: 5.157

2.  Engineering of single Ig superfamily domain of intercellular adhesion molecule 1 (ICAM-1) for native fold and function.

Authors:  Róisín M Owens; Xiaoling Gu; Miran Shin; Timothy A Springer; Moonsoo M Jin
Journal:  J Biol Chem       Date:  2010-03-19       Impact factor: 5.157

Review 3.  Structural basis of integrin regulation and signaling.

Authors:  Bing-Hao Luo; Christopher V Carman; Timothy A Springer
Journal:  Annu Rev Immunol       Date:  2007       Impact factor: 28.527

4.  Structure-based protocol for identifying mutations that enhance protein-protein binding affinities.

Authors:  Deanne W Sammond; Ziad M Eletr; Carrie Purbeck; Randall J Kimple; David P Siderovski; Brian Kuhlman
Journal:  J Mol Biol       Date:  2007-06-08       Impact factor: 5.469

Review 5.  Progress in computational protein design.

Authors:  Shaun M Lippow; Bruce Tidor
Journal:  Curr Opin Biotechnol       Date:  2007-07-20       Impact factor: 9.740

6.  Interplay of physics and evolution in the likely origin of protein biochemical function.

Authors:  Jeffrey Skolnick; Mu Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

7.  Flex ddG: Rosetta Ensemble-Based Estimation of Changes in Protein-Protein Binding Affinity upon Mutation.

Authors:  Kyle A Barlow; Shane Ó Conchúir; Samuel Thompson; Pooja Suresh; James E Lucas; Markus Heinonen; Tanja Kortemme
Journal:  J Phys Chem B       Date:  2018-02-15       Impact factor: 2.991

8.  The protein-protein interface evolution acts in a similar way to antibody affinity maturation.

Authors:  Bohua Li; Lei Zhao; Chong Wang; Huaizu Guo; Lan Wu; Xunming Zhang; Weizhu Qian; Hao Wang; Yajun Guo
Journal:  J Biol Chem       Date:  2009-12-10       Impact factor: 5.157

Review 9.  Computer-aided design of functional protein interactions.

Authors:  Daniel J Mandell; Tanja Kortemme
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

10.  On the role of physics and evolution in dictating protein structure and function.

Authors:  Jeffrey Skolnick; Mu Gao; Hongyi Zhou
Journal:  Isr J Chem       Date:  2014-08-01       Impact factor: 3.333

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