Literature DB >> 16352710

Diffusion and scaling during early embryonic pattern formation.

Thomas Gregor1, William Bialek, Rob R de Ruyter van Steveninck, David W Tank, Eric F Wieschaus.   

Abstract

Development of spatial patterns in multicellular organisms depends on gradients in the concentration of signaling molecules that control gene expression. In the Drosophila embryo, Bicoid (Bcd) morphogen controls cell fate along 70% of the anteroposterior axis but is translated from mRNA localized at the anterior pole. Gradients of Bcd and other morphogens are thought to arise through diffusion, but this basic assumption has never been rigorously tested in living embryos. Furthermore, because diffusion sets a relationship between length and time scales, it is hard to see how patterns of gene expression established by diffusion would scale proportionately as egg size changes during evolution. Here, we show that the motion of inert molecules through the embryo is well described by the diffusion equation on the relevant length and time scales, and that effective diffusion constants are essentially the same in closely related dipteran species with embryos of very different size. Nonetheless, patterns of gene expression in these different species scale with egg length. We show that this scaling can be traced back to scaling of the Bcd gradient itself. Our results, together with constraints imposed by the time scales of development, suggest that the mechanism for scaling is a species-specific adaptation of the Bcd lifetime.

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Year:  2005        PMID: 16352710      PMCID: PMC1311912          DOI: 10.1073/pnas.0509483102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

Review 1.  How to get ahead: the origin, evolution and function of bicoid.

Authors:  Alistair P McGregor
Journal:  Bioessays       Date:  2005-09       Impact factor: 4.345

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Authors:  W Denk; J H Strickler; W W Webb
Journal:  Science       Date:  1990-04-06       Impact factor: 47.728

3.  Establishment of developmental precision and proportions in the early Drosophila embryo.

Authors:  Bahram Houchmandzadeh; Eric Wieschaus; Stanislas Leibler
Journal:  Nature       Date:  2002-02-14       Impact factor: 49.962

4.  A gradient of bicoid protein in Drosophila embryos.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

5.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

6.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

7.  Diffusion in embryogenesis.

Authors:  F Crick
Journal:  Nature       Date:  1970-01-31       Impact factor: 49.962

8.  Reduced protein diffusion rate by cytoskeleton in vegetative and polarized dictyostelium cells.

Authors:  E O Potma; W P de Boeij; L Bosgraaf; J Roelofs; P J van Haastert; D A Wiersma
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

Review 9.  Seeing is believing: the bicoid morphogen gradient matures.

Authors:  Anne Ephrussi; Daniel St Johnston
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

10.  Molecular mobility and nucleocytoplasmic flux in hepatoma cells.

Authors:  I Lang; M Scholz; R Peters
Journal:  J Cell Biol       Date:  1986-04       Impact factor: 10.539

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  124 in total

1.  A computational statistics approach for estimating the spatial range of morphogen gradients.

Authors:  Jitendra S Kanodia; Yoosik Kim; Raju Tomer; Zia Khan; Kwanghun Chung; John D Storey; Hang Lu; Philipp J Keller; Stanislav Y Shvartsman
Journal:  Development       Date:  2011-10-17       Impact factor: 6.868

2.  The Bicoid gradient is shaped independently of nuclei.

Authors:  Oliver Grimm; Eric Wieschaus
Journal:  Development       Date:  2010-09-01       Impact factor: 6.868

3.  Multiscale modeling of diffusion in the early Drosophila embryo.

Authors:  Christine Sample; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 4.  Modelling the Bicoid gradient.

Authors:  Oliver Grimm; Mathieu Coppey; Eric Wieschaus
Journal:  Development       Date:  2010-07       Impact factor: 6.868

5.  Measurement and perturbation of morphogen lifetime: effects on gradient shape.

Authors:  Jeffrey A Drocco; Oliver Grimm; David W Tank; Eric Wieschaus
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

6.  Quantifying the Gurken morphogen gradient in Drosophila oogenesis.

Authors:  Lea A Goentoro; Gregory T Reeves; Craig P Kowal; Luigi Martinelli; Trudi Schüpbach; Stanislav Y Shvartsman
Journal:  Dev Cell       Date:  2006-08       Impact factor: 12.270

7.  Systems biology of embryonic morphogens.

Authors:  Jean-Louis Plouhinec; E M De Robertis
Journal:  Mol Biosyst       Date:  2007-05-01

8.  Probing the limits to positional information.

Authors:  Thomas Gregor; David W Tank; Eric F Wieschaus; William Bialek
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

9.  Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos.

Authors:  David Cheung; Cecelia Miles; Martin Kreitman; Jun Ma
Journal:  Development       Date:  2013-11-27       Impact factor: 6.868

10.  Variation in the dorsal gradient distribution is a source for modified scaling of germ layers in Drosophila.

Authors:  Juan Sebastian Chahda; Rui Sousa-Neves; Claudia Mieko Mizutani
Journal:  Curr Biol       Date:  2013-04-11       Impact factor: 10.834

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