Literature DB >> 16346522

Laboratory calibrations of the [h]adenine technique for measuring rates of RNA and DNA synthesis in marine microorganisms.

C D Winn1, D M Karl.   

Abstract

The nucleic acid synthesis rates of several marine phytoplankton and bacteria grown in chemostat and batch cultures were measured by using [H]adenine. The [H]adenine synthesis rates showed excellent agreement with the known rates of synthesis estimated from chemical RNA and DNA data. Under certain conditions, RNA turnover and ATP pool compartmentalization produce inaccuracies in synthesis measurements made with [H]adenine. However, accurate measurements of the rates of microbial RNA and DNA synthesis can be made in any environmental situation provided a few simple precautions are observed. First, time course experiments are recommended. Second, experiments should be conducted for periods long enough to avoid problems arising from disequilibria of internal ATP pools. Finally, exogenous [H]adenine should remain in the medium over the length of the time course.

Entities:  

Year:  1984        PMID: 16346522      PMCID: PMC239773          DOI: 10.1128/aem.47.4.835-842.1984

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  17 in total

Review 1.  Adenine nucleotide concentrations and turnover rates. Their correlation with biological activity in bacteria and yeast.

Authors:  A G Chapman; D E Atkinson
Journal:  Adv Microb Physiol       Date:  1977       Impact factor: 3.517

2.  Selected nucleic Acid precursors in studies of aquatic microbial ecology.

Authors:  D M Karl
Journal:  Appl Environ Microbiol       Date:  1982-10       Impact factor: 4.792

3.  Bacterioplankton secondary production estimates for coastal waters of british columbia, antarctica, and california.

Authors:  J A Fuhrman; F Azam
Journal:  Appl Environ Microbiol       Date:  1980-06       Impact factor: 4.792

4.  Alternative model and approach for determining microbial heterotrophic activities in aquatic systems.

Authors:  A S Dietz; L J Albright; T Tuominen
Journal:  Appl Environ Microbiol       Date:  1977-04       Impact factor: 4.792

5.  Computer simulation as an aid in the experimental characterization of the compartmentation of ribonucleic acid precursor in E. coli.

Authors:  J E Summerton; R A Norling
Journal:  Comput Biomed Res       Date:  1974-08

6.  Micro estimation of RNA by the cupric ion catalyzed orcinol reaction.

Authors:  R I Lin; O A Schjeide
Journal:  Anal Biochem       Date:  1969-03       Impact factor: 3.365

7.  On the question of compartmentalization of the nucleotide pool.

Authors:  J X Khym; M H Jones; W H Lee; J D Regan; E Volkin
Journal:  J Biol Chem       Date:  1978-12-25       Impact factor: 5.157

8.  Comparison of methods for measurement of bacterial growth rates in mixed batch cultures.

Authors:  R R Christian; R B Hanson; S Y Newell
Journal:  Appl Environ Microbiol       Date:  1982-05       Impact factor: 4.792

Review 9.  Cellular nucleotide measurements and applications in microbial ecology.

Authors:  D M Karl
Journal:  Microbiol Rev       Date:  1980-12

10.  Separate pyrimidine-nucleotide pools for messenger-RNA and ribosomal-RNA synthesis in HeLa S3 cells.

Authors:  U Wiegers; G Kramer; K Klapproth; H Hilz
Journal:  Eur J Biochem       Date:  1976-05-01
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  6 in total

1.  Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean.

Authors:  Harriet Alexander; Mónica Rouco; Sheean T Haley; Samuel T Wilson; David M Karl; Sonya T Dyhrman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  Measurement of Microbial Nucleic Acid Synthesis and Specific Growth Rate by PO(4) and [H]Adenine: Field Comparison.

Authors:  D M Karl; P Bossard
Journal:  Appl Environ Microbiol       Date:  1985-09       Impact factor: 4.792

3.  Microbial growth rates and biomass production in a marine sediment: evidence for a very active but mostly nongrowing community.

Authors:  J A Novitsky
Journal:  Appl Environ Microbiol       Date:  1987-10       Impact factor: 4.792

4.  Experimental evaluation of conversion factors for the [h]thymidine incorporation assay of bacterial secondary productivity.

Authors:  M F Coveney; R G Wetzel
Journal:  Appl Environ Microbiol       Date:  1988-08       Impact factor: 4.792

5.  Influence of deep ocean sewage outfalls on the microbial activity of the surrounding sediment.

Authors:  J A Novitsky; D M Karl
Journal:  Appl Environ Microbiol       Date:  1985-12       Impact factor: 4.792

6.  Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre.

Authors:  Paola R Gómez-Pereira; Manuela Hartmann; Carolina Grob; Glen A Tarran; Adrian P Martin; Bernhard M Fuchs; David J Scanlan; Mikhail V Zubkov
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302

  6 in total

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