Literature DB >> 16346114

Selected nucleic Acid precursors in studies of aquatic microbial ecology.

D M Karl1.   

Abstract

The use of radiolabeled nucleosides and nucleic acid bases to estimate the rates of RNA and DNA synthesis in naturally occurring microbial assemblages requires numerous assumptions, several of which are evaluated herein. Comparative time series analyses of the uptake and incorporation, labeling specificity, and extent of catabolism of [2-H]adenine, [methyl-H]thymidine, and [5-H]uridine were performed with pure bacterial and algal cultures, as well as with environmental samples. [H]thymidine yielded the most variable results, especially with regard to the extent of nonspecific macromolecular labeling. The pathways of [H]thymidine and [H]adenine metabolism were further evaluated by isotope dilution methods and by comparing incorporation patterns of thymidine labeled at different sites of the molecule. The advantages, uncertainties, and limitations of the use of radiolabeled nucleic acid precursors in studies of aquatic microbial ecology are discussed and a prospectus for future studies presented.

Entities:  

Year:  1982        PMID: 16346114      PMCID: PMC242114          DOI: 10.1128/aem.44.4.891-902.1982

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

1.  Simultaneous rates of ribonucleic Acid and deoxyribonucleic Acid syntheses for estimating growth and cell division of aquatic microbial communities.

Authors:  D M Karl
Journal:  Appl Environ Microbiol       Date:  1981-11       Impact factor: 4.792

2.  Microbial biomass and activity distribution in an anoxic, hypersaline basin.

Authors:  P A Larock; R D Lauer; J R Schwarz; K K Watanabe; D A Wiesenburg
Journal:  Appl Environ Microbiol       Date:  1979-03       Impact factor: 4.792

3.  Measurement of microbial activity and growth in the ocean by rates of stable ribonucleic Acid synthesis.

Authors:  D M Karl
Journal:  Appl Environ Microbiol       Date:  1979-11       Impact factor: 4.792

Review 4.  Regulation of bacterial growth, RNA, and protein synthesis.

Authors:  D P Nierlich
Journal:  Annu Rev Microbiol       Date:  1978       Impact factor: 15.500

5.  Regulation of ribosomal and transfer ribonucleic acid synthesis in Escherichia coli B-r.

Authors:  P P Dennis
Journal:  J Biol Chem       Date:  1972-05-10       Impact factor: 5.157

6.  Thymidine kinase activity in Dictyostelium discoideum.

Authors:  C A Michrina; R A Deering
Journal:  J Gen Microbiol       Date:  1980-07

7.  Evidence for incorporation of thymidine into deoxyribonucleic acid in airborne bacterial cells.

Authors:  P A Straat; H Wolochow; R L Dimmick; M A Chatigny
Journal:  Appl Environ Microbiol       Date:  1977-09       Impact factor: 4.792

8.  In vivo specific labeling of Chlamydomonas chloroplast DNA.

Authors:  D C Swinton; P C Hanawalt
Journal:  J Cell Biol       Date:  1972-09       Impact factor: 10.539

9.  Occurrence and metabolic activity of organisms under the ross ice shelf, antarctica, at station j9.

Authors:  F Azam; J R Beers; L Campbell; A F Carlucci; O Holm-Hansen; F M Reid; D M Karl
Journal:  Science       Date:  1979-02-02       Impact factor: 47.728

10.  Incorporation of thymidine in the cytoplasm of Amoeba proteus.

Authors:  W PLAUT; L A SAGAN
Journal:  J Biophys Biochem Cytol       Date:  1958-11-25
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  23 in total

1.  Activity measurements of planktonic microbial and microfouling communities in a eutrophic estuary.

Authors:  W H Jeffrey; J H Paul
Journal:  Appl Environ Microbiol       Date:  1986-01       Impact factor: 4.792

2.  Effect of 5-fluoro-2'-deoxyuridine on [h]thymidine incorporation by bacterioplankton in the waters of southwest Florida.

Authors:  W H Jeffrey; J H Paul
Journal:  Appl Environ Microbiol       Date:  1988-02       Impact factor: 4.792

3.  Rate of bacterial mortality in aquatic environments.

Authors:  P Servais; G Billen; J V Rego
Journal:  Appl Environ Microbiol       Date:  1985-06       Impact factor: 4.792

4.  A Study on the lack of [methyl-(3)H] thymidine uptake and incorporation by chemolithotrophic bacteria.

Authors:  B H Johnstone; R D Jones
Journal:  Microb Ecol       Date:  1989-07       Impact factor: 4.552

5.  Measurement of bacterial growth rates in subsurface sediments using the incorporation of tritiated thymidine into DNA.

Authors:  P M Thorn; R M Ventullo
Journal:  Microb Ecol       Date:  1988-07       Impact factor: 4.552

6.  Estimating Bacterioplankton Production by Measuring [H]thymidine Incorporation in a Eutrophic Swedish Lake.

Authors:  R T Bell; G M Ahlgren; I Ahlgren
Journal:  Appl Environ Microbiol       Date:  1983-06       Impact factor: 4.792

7.  Dual-Label Radioisotope Method for Simultaneously Measuring Bacterial Production and Metabolism in Natural Waters.

Authors:  Robert B Jonas; Jon H Tuttle; Daphne L Stoner; Hugh W Ducklow
Journal:  Appl Environ Microbiol       Date:  1988-03       Impact factor: 4.792

8.  Laboratory calibrations of the [h]adenine technique for measuring rates of RNA and DNA synthesis in marine microorganisms.

Authors:  C D Winn; D M Karl
Journal:  Appl Environ Microbiol       Date:  1984-04       Impact factor: 4.792

9.  Light dependence of [3H]leucine incorporation in the oligotrophic North Pacific ocean.

Authors:  Matthew J Church; Hugh W Ducklow; David M Karl
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

10.  Use of radiolabelled thymidine and leucine to estimate bacterial production in soils from continental antarctica.

Authors:  B J Tibbles; J M Harris
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

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