Literature DB >> 16345461

Measurement of microbial activity and growth in the ocean by rates of stable ribonucleic Acid synthesis.

D M Karl1.   

Abstract

A relatively simple and extremely sensitive technique for measuring rates of stable ribonucleic acid (RNA) synthesis was devised and applied to bacterial cultures and seawater samples. The procedure is based upon the uptake and incorporation of exogenous radiolabeled adenine into cellular RNA. To calculate absolute rates of synthesis, measurements of the specific radioactivity of the intracellular adenosine 5'-triphosphate pools (precursor to RNA) and of the total amount of radioactivity incorporated into stable cellular RNA per unit time are required. Since the rate of RNA synthesis is positively correlated with growth rate, measurements of RNA synthesis should be extremely useful for estimating and comparing the productivities of microbial assemblages in nature. Adenosine 5'-triphosphate, adenylate energy charge, and rates of stable RNA synthesis have been measured at a station located in the Columbian Basin of the Caribbean Sea. A subsurface peak in RNA synthesis (and therefore growth) was located within the dissolved oxygen minimum zone (450 m), suggesting in situ microbiological utilization of dissolved molecular oxygen. Calculations of the specific rates of RNA synthesis (i.e., RNA synthesis per unit of biomass) revealed that the middepth maximum corresponded to the highest specific rate of growth (420 pmol of adenine incorporated into RNA.day) of all depths sampled, including the euphotic zone. The existence of an intermediate depth zone of active microbial growth may be an important site for nutrient regeneration and may serve as a source of reduced carbon for mesopelagic and deep sea environments.

Entities:  

Year:  1979        PMID: 16345461      PMCID: PMC243599          DOI: 10.1128/aem.38.5.850-860.1979

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  31 in total

1.  Incorporation of ribonucleic acid bases into the metabolic pool and RNA of E. coli.

Authors:  M BUCHWALD; R J BRITTEN
Journal:  Biophys J       Date:  1963-03       Impact factor: 4.033

2.  Microbial biomass and activity distribution in an anoxic, hypersaline basin.

Authors:  P A Larock; R D Lauer; J R Schwarz; K K Watanabe; D A Wiesenburg
Journal:  Appl Environ Microbiol       Date:  1979-03       Impact factor: 4.792

3.  Effect of cyclic AMP on nucleoside metabolism. III. Effect on uridine incorporation in monkey (CV-1) cells.

Authors:  B A Roller; K Hirai; V Defendi
Journal:  Biochim Biophys Acta       Date:  1974-11-06

4.  Adenosine triphosphate conservation in biosynthetic regulation. Escherichia coli phosphoribosylpyrophosphate synthase.

Authors:  D E Atkinson; L Fall
Journal:  J Biol Chem       Date:  1967-07-10       Impact factor: 5.157

5.  Ratios between contents of DNA, RNA and protein in different micro-organisms as a function of maximal growth rate.

Authors:  V Leick
Journal:  Nature       Date:  1968-03-23       Impact factor: 49.962

6.  An improved method for thin-layer chromatography of nucleotide mixtures containing 32P-labelled orthophosphate.

Authors:  M Cashel; R A Lazzarini; B Kalbacher
Journal:  J Chromatogr       Date:  1969-03-11

7.  Measurement of the pool size and synthesis rate of the metabolically unstable fraction of RNA in Escherichia coli by a method independent of hybridization efficiency and unaffected by precursor compartmentation.

Authors:  J E Summerton
Journal:  J Mol Biol       Date:  1976-01-15       Impact factor: 5.469

8.  The relationship between rates of ( 3 H)uridine and ( 3 H)adenine incorporation into RNA and the measured rates of RNA synthesis during the cell cycle.

Authors:  P J Stambrook; J E Sisken
Journal:  Biochim Biophys Acta       Date:  1972-09-29

9.  Nucleotide metabolism during differentiation in Dictyostelium discoideum.

Authors:  C L Rutherford; B E Wright
Journal:  J Bacteriol       Date:  1971-10       Impact factor: 3.490

10.  Occurrence and metabolic activity of organisms under the ross ice shelf, antarctica, at station j9.

Authors:  F Azam; J R Beers; L Campbell; A F Carlucci; O Holm-Hansen; F M Reid; D M Karl
Journal:  Science       Date:  1979-02-02       Impact factor: 47.728

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  22 in total

1.  Effects of alkaline phosphatase activity on nucleotide measurements in aquatic microbial communities.

Authors:  D M Karl; D B Craven
Journal:  Appl Environ Microbiol       Date:  1980-09       Impact factor: 4.792

2.  Measurement of Microbial Nucleic Acid Synthesis and Specific Growth Rate by PO(4) and [H]Adenine: Field Comparison.

Authors:  D M Karl; P Bossard
Journal:  Appl Environ Microbiol       Date:  1985-09       Impact factor: 4.792

3.  Isolation of Typical Marine Bacteria by Dilution Culture: Growth, Maintenance, and Characteristics of Isolates under Laboratory Conditions.

Authors:  F Schut; E J de Vries; J C Gottschal; B R Robertson; W Harder; R A Prins; D K Button
Journal:  Appl Environ Microbiol       Date:  1993-07       Impact factor: 4.792

4.  Simultaneous rates of ribonucleic Acid and deoxyribonucleic Acid syntheses for estimating growth and cell division of aquatic microbial communities.

Authors:  D M Karl
Journal:  Appl Environ Microbiol       Date:  1981-11       Impact factor: 4.792

5.  Radioisotopic method for measuring cell division rates of individual species of diatoms from natural populations.

Authors:  R B Rivkin
Journal:  Appl Environ Microbiol       Date:  1986-04       Impact factor: 4.792

6.  Method for Assessing Heterogeneity in Turnover Rates within Microbial Communities.

Authors:  E A Laws; D Jones; D M Karl
Journal:  Appl Environ Microbiol       Date:  1986-10       Impact factor: 4.792

7.  Degradation of dead microbial biomass in a marine sediment.

Authors:  J A Novitsky
Journal:  Appl Environ Microbiol       Date:  1986-09       Impact factor: 4.792

8.  Frequency of dividing cells as an estimator of bacterial productivity.

Authors:  S Y Newell; R R Christian
Journal:  Appl Environ Microbiol       Date:  1981-07       Impact factor: 4.792

9.  Comparison of rates of flagellate bacterivory and bacterial production in a marine coastal system.

Authors:  I Barcina; B Ayo; M Unanue; L Egea; J Iriberri
Journal:  Appl Environ Microbiol       Date:  1992-12       Impact factor: 4.792

10.  Measuring microzooplankton grazing on planktonic marine bacteria by its impact on bacterial production.

Authors:  R T Wright; R B Coffin
Journal:  Microb Ecol       Date:  1984-06       Impact factor: 4.552

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