Literature DB >> 16332899

Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs.

Natalya Yutin1, Marcelino T Suzuki, Oded Béjà.   

Abstract

Aerobic anoxygenic phototrophic bacteria (AAnPs) were previously proposed to account for up to 11% of marine bacterioplankton and to potentially have great ecological importance in the world's oceans. Our data show that previously used primers based on the M subunit of anoxygenic photosynthetic reaction center genes (pufM) do not comprehensively identify the diversity of AAnPs in the ocean. We have designed and tested a new set of pufM-specific primers and revealed several new AAnP variants in environmental DNA samples and genomic libraries.

Entities:  

Mesh：

Substances：

Year:  2005        PMID： 16332899      PMCID： PMC1317425          DOI： 10.1128/AEM.71.12.8958-8962.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  16 in total

1.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

2.  Bacterial photosynthesis in surface waters of the open ocean.

Authors:  Z S Kolber; C L Van Dover; R A Niederman; P G Falkowski
Journal:  Nature       Date:  2000-09-14       Impact factor: 49.962

3.  Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake.

Authors:  Elizabeth A Karr; W Matthew Sattley; Deborah O Jung; Michael T Madigan; Laurie A Achenbach
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

4.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

5.  Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River.

Authors:  Lisa A Waidner; David L Kirchman
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

6.  Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria.

Authors:  K V Nagashima; A Hiraishi; K Shimada; K Matsuura
Journal:  J Mol Evol       Date:  1997-08       Impact factor: 2.395

7.  Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel.

Authors:  R Massana; A E Murray; C M Preston; E F DeLong
Journal:  Appl Environ Microbiol       Date:  1997-01       Impact factor: 4.792

8.  Phylogenetic distribution of unusual triheme to tetraheme cytochrome subunit in the reaction center complex of purple photosynthetic bacteria.

Authors:  Yusuke Tsukatani; Katsumi Matsuura; Shinji Masuda; Keizo Shimada; Akira Hiraishi; Kenji V P Nagashima
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

9.  Roseobacter-like bacteria in red and mediterranean sea aerobic anoxygenic photosynthetic populations.

Authors:  Aia Oz; Gazalah Sabehi; Michal Koblízek; Ramon Massana; Oded Béjà
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

10.  New insights into metabolic properties of marine bacteria encoding proteorhodopsins.

Authors:  Gazalah Sabehi; Alexander Loy; Kwang-Hwan Jung; Ranga Partha; John L Spudich; Tal Isaacson; Joseph Hirschberg; Michael Wagner; Oded Béjà
Journal:  PLoS Biol       Date:  2005-07-19       Impact factor: 8.029
View more
  28 in total

1.  Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom.

Authors:  Erinn C Howard; Shulei Sun; Christopher R Reisch; Daniela A del Valle; Helmut Bürgmann; Ronald P Kiene; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Abundance, depth distribution, and composition of aerobic bacteriochlorophyll a-producing bacteria in four basins of the central Baltic Sea.

Authors:  Ivette Salka; Vladimíra Moulisová; Michal Koblízek; Günter Jost; Klaus Jürgens; Matthias Labrenz
Journal:  Appl Environ Microbiol       Date:  2008-05-23       Impact factor: 4.792

3.  Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary.

Authors:  Lisa A Waidner; David L Kirchman
Journal:  Appl Environ Microbiol       Date:  2008-05-09       Impact factor: 4.792

4.  BchY-based degenerate primers target all types of anoxygenic photosynthetic bacteria in a single PCR.

Authors:  Natalya Yutin; Marcelino T Suzuki; Mira Rosenberg; Denisse Rotem; Michael T Madigan; Jörg Süling; Johannes F Imhoff; Oded Béjà
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

5.  High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

Authors:  Manuel Martinez-Garcia; Brandon K Swan; Nicole J Poulton; Monica Lluesma Gomez; Dashiell Masland; Michael E Sieracki; Ramunas Stepanauskas
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

6.  Geographic Impact on Genomic Divergence as Revealed by Comparison of Nine Citromicrobial Genomes.

Authors:  Qiang Zheng; Yanting Liu; Christian Jeanthon; Rui Zhang; Wenxin Lin; Jicheng Yao; Nianzhi Jiao
Journal:  Appl Environ Microbiol       Date:  2016-11-21       Impact factor: 4.792

7.  Novel acsF Gene Primers Revealed a Diverse Phototrophic Bacterial Population, Including Gemmatimonadetes, in Lake Taihu (China).

Authors:  Yili Huang; Yanhua Zeng; Hang Lu; Hao Feng; Yonghui Zeng; Michal Koblížek
Journal:  Appl Environ Microbiol       Date:  2016-08-30       Impact factor: 4.792

8.  Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate.

Authors:  Helge-Ansgar Giebel; Daniela Kalhoefer; Andreas Lemke; Sebastian Thole; Renate Gahl-Janssen; Meinhard Simon; Thorsten Brinkhoff
Journal:  ISME J       Date:  2010-07-01       Impact factor: 10.302

9.  Deep sequencing of a dimethylsulfoniopropionate-degrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data.

Authors:  Vanessa A Varaljay; Erinn C Howard; Shulei Sun; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2009-11-30       Impact factor: 4.792

10.  primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.

Authors:  Bruno Contreras-Moreira; Bernardo Sachman-Ruiz; Iraís Figueroa-Palacios; Pablo Vinuesa
Journal:  Nucleic Acids Res       Date:  2009-05-21       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.